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Axioimager z2 apotome

Manufactured by Zeiss
Sourced in Germany, United States

The Axioimager Z2 apotome is a microscope system designed for high-resolution fluorescence imaging. It features an integrated structured illumination module that enables optical sectioning, allowing for the acquisition of thin optical sections within a sample. The system is suitable for a range of applications, including cell biology, neuroscience, and developmental biology.

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8 protocols using axioimager z2 apotome

1

Assessing DNA Damage and Platinum Adducts

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DNA double-strand break induction following cisplatin treatment was assessed using indirect immunofluorescence and a γH2AX antibody [40 (link)]. Platinum-DNA-adduct (Pt-(GpG)) detection was conducted according to a published protocol [41 (link)]. Axio Imager Z.2 + Apotome (Zeiss, Jena, Germany) was used for documentation and ImageJ for the image analysis.
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2

Quantification of Motoneuron Axon Length

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For the quantification of axon length, motoneurons were seeded at a density of 750 cells/cm2. At one day in vitro, motoneurons were processed for immunostaining with β-tubulin III antibodies. Images were acquired with a ZEISS AXIO Imager Z2 Apotome and axon length was determined using ImageJ software v1.53 and the NeuronJ plugin (National Institutes of Health, Bethesda, MD, USA) [47 (link)]. Total axon length was determined by measuring the length of the longest neurite with connected branches of β-tubulin III-positive motoneurons [46 ].
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3

Immunofluorescence Microscopy Imaging Protocol

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Images from immunoperoxidase stained sections were captured using a Leica slide scanner and Zeiss Axioplan 2 microscope; from immunofluorescent stained human sections with a Zeiss Axioimager Z2 apotome; from immunofluorescent stained marmoset sections with an Axio Imager Z1 microscope (Zeiss) equipped with a Zeiss Axiocam HRm digital camera using the Axiovision software (v 4.8.1.0) at a resolution of 1024 × 1024 pixels. The objectives used were Zeiss EC-Plan Neofluar 10×0.3, #420 340–9901. Filter sets used for visualizing fluorescently-labeled cells were Zeiss 49 Dapi #488 049-9901-000, and Zeiss HQ Texas Red #000 000-1114-462. Images were adjusted for brightness and sharpness using Adobe Photoshop CS6 software. Planes of sectioning are illustrated in Supplementary Figure S1.
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4

Quantifying Cell Populations in Developing Fetal Brain

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Images from immunoperoxidase‐stained sections were captured using a Leica slide scanner and Zeiss Axioplan 2 microscope; and from immunofluorescent‐stained sections with a Zeiss Axioimager Z2 apotome. Images were adjusted for brightness and sharpness using Adobe photoshop CS6 software. Cells were counted from five sections selected at intervals along the anterior–posterior axis of each fetal sample (12 PCW, n = 2 and 19 PCW, n = 2, therefore n = 10 for each age). Sections were observed under medium magnification; rectangular counting boxes 100 μm in width were placed over the ventricular/subventricular zones (VZ/SVZ) and intermediate zone/cortical plate (IZ/CP) delineated by the nuclear staining (DAPI).
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5

Quantification of Fetal Brain Cell Types

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Images from immunoperoxidase stained sections were captured using a Leica slide scanner and Zeiss Axioplan 2 microscope; from immunofluorescent stained cells and sections with a Zeiss Axioimager Z2 apotome. Images were adjusted for brightness and sharpness using Adobe Photoshop CS6 software. Cells were counted from 5 sections from each fetal sample (8 PCW, n = 2 and 12 PCW, n = 2, therefore n = 10 for each age). Sections were observed under medium magnification, rectangular counting boxes of 100 μm width were placed over the ventricular/subventricular zones (VZ/SVZ) and intermediate zone/CP (IZ/CP) delineated by the nuclear staining (DAPI) on intact parts of the anterior and posterior cortex but otherwise without examining the section first. For quantification in dissociated culture, cells were cultured from 3 different fetal brains in 12-well plates, each staining combination made in duplicate. Photomicrographs were captured from 3 random fields of view from each well from which cell counts were made (therefore n = 18). Mean values with the standard error were calculated. Experimental groups were compared using a 2-tailed t-test.
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6

Quantification of SCGN-Expressing Cell Populations

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Images from immunoperoxidase-stained sections were captured using a Leica slide scanner and Zeiss Axioplan 2 microscope, and from immunofluorescent-stained sections with a Zeiss Axioimager Z2 apotome. Images were adjusted for brightness and sharpness using Adobe PHOTOSHOP CS6 software. Double labeling of cells for SCGN with either DLX2 or CalR was counted from five sections selected at intervals along the anterior-posterior axis of sections from two samples aged 19 PCW. The sections were observed under medium magnification; rectangular counting boxes 100 μm in width were placed over the ventricular/subventricular zones (VZ/SVZ) and intermediate zone/cortical plate (IZ/CP) delineated by the nuclear staining (DAPI).
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7

Visualizing RNA Expression with RNAscope

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RNAscope in situ Hybridization Images were captured using Leica SCN400 Slide Scanner. Fluorescent images were obtained with a Zeiss Axioimager Z2 apotome. Processing of images, which included only adjustment of brightness and sharpness, was achieved using the Adobe Photoshop CS6 software.
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8

Visualizing RNA Expression with RNAscope

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RNAscope in situ Hybridization Images were captured using Leica SCN400 Slide Scanner. Fluorescent images were obtained with a Zeiss Axioimager Z2 apotome. Processing of images, which included only adjustment of brightness and sharpness, was achieved using the Adobe Photoshop CS6 software.
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