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6 protocols using human α thrombin

1

Purification and Use of Convulxin

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Convulxin was purified to homogeneity from crude snake venom (21 (link)). Proteinase-activated receptor-1 (PAR-1) agonist peptide SFLLRN was from Bachem (Bubendorf, Switzerland), human α-thrombin and ionomycin were from Sigma-Aldrich (St. Louis, MO). Fluorescein isothiocyanate (FITC)-labeled anti-CD62P mAb against P-selectin was from Beckman Coulter (Marseille, France); FITC-annexin A5 from PharmaTarget (Maastricht, The Netherlands); Alexa Fluor (AF)647-labeled fibrinogen from Invitrogen Life Technologies (Bleiswijk, The Netherlands); ABT-737 from Santa Cruz Biotechnology (Santa Cruz, CA); QVD-Oph and calpeptin from Calbiochem (San Diego, CA). Other chemicals, (ant)agonists and antibodies were obtained from sources described before (11 (link)).
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2

Synthesis of Graphene Oxide for Thrombin Aptamer Immobilization

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Expanded graphite powder (100 mesh) was purchased from Xinghe Graphite Co., Ltd. (Qingdao, China). Chemicals used in the synthesis of GO were purchased from Beijing Chemical Works (Beijing, China). 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride (EDC) and 2-(N-morpholino)ethanesulfonic acid (MES) were purchased from the J&K (Beijing, China). Bovine serum albumin (BSA) and human α-thrombin were purchased from Sigma-Aldrich. The aptamer targeting human α-thrombin with a five T spacer (5′-TTTTT GGT TGG TGT GGT TGG-3′, named as Apt-15), with the 5′ end modified by the amino group through a C6-carbon spacer arm, was synthesized by Sangong Biotech (Beijing, China). Other chemicals and analytically pure reagents were used as received. All solutions were prepared with deionized water.
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3

Purification and Characterization of HuPK and rBbKI

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HuPK was purified as previously described [14 (link)] and the specific activity was found to be 80 U/mg. Recombinant Bauhinia bauhinioides kallikrein inhibitor (rBbKI) was obtained as described [15 (link)]. ADP, ATP-standard, and luciferin-luciferase were from Chrono-Log (Chester, PA, USA). Human α-thrombin (200 NIH units/mg) was from Sigma (St. Louis, MO, USA). The PAR-1 antagonist SCH 79797 was from Cayman Chemical (Ann Arbor, MI, USA); abciximab was from Eli Lilly and Company (Indianapolis, IN, USA), while Fluo-4-AM was from Thermo Fisher Scientific Corporation (Waltham, MA, USA). TLCK was purchased from Merck KGaA /Calbiochem (Darmstadt, Germany).
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4

Platelet Activation Pathway Study

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Human α-thrombin and adenosine 5’-diphosphate sodium salt (ADP) were purchased from Sigma-Aldrich (St Louis, MO, USA). PAR1-activating peptide (PAR1-AP; TFLLR-NH2) and PAR4-activating peptide (PAR4-AP; AYPGKF-NH2) were synthesised at Monash Institute of Pharmaceutical Sciences (Melbourne, Australia) by Assoc Professor Philip Thompson. The mouse anti-P-selectin (FITC anti-mouse CD62P) and human anti-P-selectin (PE anti-human CD62P) antibodies were purchased from BD Biosciences (San Jose, CA, USA). PE anti-CD45.2, PE anti-CD41a (human) antibody and PE anti-CD41 antibody (mouse) were purchased from Abcam (Melbourne, Australia). The PE-anti-GPIb-tail and non-immune rabbit IgG isotype were a generous gift from Assoc Professor Robert Andrews (Monash University, Melbourne, Australia). The anti-PAR1 antibody (ATAP2), anti-PAR3 antibody (8E8), HRP-anti-actin (I-19) and HRP- anti-mouse IgG were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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5

Clot Permeability Measurement Protocol

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Clot permeability (Ks), an indication of the intrinsic pore size of the network, was measured as described previously.29 (link) Essentially, plasma clots were prepared in triplicate in 3-cm sections of 1 mL plastic serological pipettes. Plasma was clotted with the addition of 1 U/mL human α-thrombin (Merck, Darmstadt, Germany) and 20 mM CaCl2. Buffer was permeated through at a pressure height of Δh = 4 cm and Ks calculated from Ks=ΔQLηΔTAΔP·ΔQ/ΔT is the flow rate (flow through volume/time), η is the viscosity (ηwater = 1.0 cP at 20°C), L is the clot length, A is the cross-sectional area of the clot, and ΔP is pressure drop. ΔP = ρwater·g·Δh, where the density of water, ρwater = 1 g/cm3, the acceleration due to gravity, g = 980 cm/second2, and Δh = 4 cm is the height of the buffer above the clot.
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6

Fibrin Clot Permeability Measurement

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Clot permeability (Ks), an indication of the intrinsic pore size of a fibrin network, was measured as described previously in [34 (link),36 (link)]. Plasma clots (1 U/mL human α-thrombin, Merck, Darmstadt, Germany, and 20 mM CaCl2) were prepared in triplicate in 3 cm sections of 1 mL plastic serological pipettes. Buffer was permeated through at a pressure height of Δh = 4 cm and Ks was calculated from Ks=ΔQ×L×ηΔT ×A ×ΔP .
ΔQ/ΔT is the flow rate (flow-through volume/time), η is the dynamic viscosity (ηwater = 1.0 cP at 20 °C), L is the clot length, A is the cross-sectional area of the clot, and ΔP is the pressure drop. ΔP = ρwater × g × Δh, where the density of water, ρwater = 1 g/cm3, the acceleration due to gravity, g = 980 cm/s2, and Δh = 4 cm is the height from the meniscus of the buffer to the bottom of the clot.
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