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3 protocols using hrp conjugated goat anti rabbit igg

1

Protein Extraction and Western Blotting

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Tissues were homogenized in lysis buffer (50 mM Tris-HCl pH 7.4, 250 mM NaCl, 0.5% (vol/vol) Igepal with complete protease and phosphatase inhibitors [protease inhibitors: 0.1 μm aprotonin (USB), 0.02 mM leupeptin (USB), 0.01 mM pepstatin (USB), 0.5 mM PMSF (Sigma); phosphatase inhibitors: 2 mM imidazole (Sigma), 1.15 mM sodium molybdate (Sigma), 1 mM sodium orthovanadate (Sigma), 5 nM microcystin (Calbiochem)]. Western blotting was performed with the following antibodies from: Cell Signaling Technology: BAP1 (#13271); Bethyl Laboratories: PBRM1 (A301-591A), Hif-1α (A300-286A); Novus Biologicals: CAIX (AF2344), Hif-2α (AF2997); Santa Cruz Biotechnology: VHL (sc-1534); Millipore: H2A (07-146), Ubiquityl-Histone H2A (05-678); Sigma: Tubulin (T5168); Thermo Fisher Scientific: HRP-conjugated goat anti-mouse IgG (#31430) and HRP-conjugated goat anti-rabbit IgG (#31460); Novus Biologicals: Donkey anti-Goat IgG Secondary Antibody (HAF109).
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2

Western Blot Analysis for Protein Detection

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Whole cell lysate protein concentrations were measured by Bradford assay to ensure equal protein loading. Proteins were separated by polyacrylamide gel electrophoresis using 4–20% gradient gels. Proteins were then transferred to 0.2 µm pore size polyvinylidene fluoride membranes. The membranes were blocked in 5% BSA in tris-buffered saline buffer containing Tween 20 (TBST) for 1.5 hours. The membranes were then incubated in primary antibody solutions containing 1% BSA in TBST overnight at 4 °C. Following primary antibody incubation, the membranes were washed 3 times for 10 minute each wash in TBST. After washing, the membranes were incubated in secondary antibody solutions containing 1% BSA in TBST for 1 hour. SuperSignal West Pico chemiluminescence substrate was used for detection. Images were recorded on an Azure C300 system using automatic exposure settings to prevent oversaturation of bands. The following primary and secondary antibodies were used: mouse anti-GAPDH (1:20,000; Novus Biologicals), mouse-anti-Myosin-hc (1:250; Novus Biologicals), rabbit-anti-parvalbumin (1:10,000; Novus Biologicals), horseradish peroxidase (HRP)-conjugated goat-anti-mouse IgG (1:1000; Novus Biologicals) and HRP-conjugated goat-anti-rabbit IgG (1:1000; Novus Biologicals). Densitometry was performed in ImageJ using the Gel Analysis tool.
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3

Western Blot Analysis of Protein Expression

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Protein samples were separated by SDS-PAGE and transferred to an Immobilon-P polyvinylidene fluoride transfer membrane (Millipore). After blocking, the membrane was incubated with a primary antibody overnight at 4°C, followed by incubation with the horseradish peroxidase-conjugated secondary antibody (HRP-conjugated goat anti-mouse IgG, Santa Cruz Biotechnology; HRP-conjugated goat anti-rabbit IgG, Novus Biologicals). Primary antibodies used in this study were anti-UCP1 (an antiserum from a rabbit immunized with the rat UCP1 purified from BAT in cold-exposed rats, as described previously81 (link)), anti-β-Actin (4967; Cell Signaling), anti-HMGCR (ab174830; Abcam), anti-RB (ab181616; Abcam), anti-C/EBPβ (sc-150; Santa Cruz Biotechnology), anti-C/EBPδ (sc-636; Santa Cruz Biotechnology), anti-α-Tubulin (2144; Cell Signaling), anti-Histone H3 (3638; Cell Signaling), anti-Caspase 3 (GTX110543; GeneTex), and anti-Cleaved Caspase 3 (Asp175) (9661; Cell Signaling). Proteins were visualized by chemiluminescence using an Immobilon Western Chemiluminescent HRP Substrate (Millipore). The chemiluminescent signal was detected using an ImageQuant LAS4000 (GE Healthcare) apparatus. The intensity of Western blot bands was quantified with ImageJ software (National Institutes of Health).
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