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10 protocols using ipi 145

1

Cell Signaling Pathway Analysis

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RPMI-1640 and McCoy's 5A medium, fetal bovine serum (FBS), penicillin and streptomycin were purchased from Lonza Milano SRL (Milan, Italy). ZSTK474, BYL719, TGX221, AS605240, CAL101, IPI145, Imatinib, Nilotinib and GZD824 were obtained from Selleck Chemicals (Houston, TX, USA). For cell viability determination, CellTiter 96 Aqueous One Solution Cell Proliferation Assay (MTS) was purchased from Promega (Milan, Italy). Annexin V/7-ADD detection kit was from Merck-Millipore (Darmstadt, Germany). Western blot antibodies for total Akt-1, Ser473 p-Akt-1 and Thr308 p-Akt-1 were from Santa Cruz Biotechnology (Santa Cruz, CA, USA), while all the other antibodies were from Cell Signaling Technology (Danvers, MA, USA), including the rabbit secondary antibody. Chloroquine, the mouse secondary antibody and the monoclonal β-Actin antibody were purchased from Sigma Aldrich (Milan, Italy). Signals were detected using ECL Plus reagent from Perkin Elmer (Boston, MA, USA).
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2

Evaluating Kinase Inhibitors in DLBCL

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The chemical SYK inhibitor, R406, was a gift from Rigel Pharmaceuticals (San Francisco, CA, USA). R406 was dissolved in DMSO at a concentration of 10 mM and stored at −80°C. For immediate inhibition, cells were incubated with 1 μM R406 or vehicle alone (in PBS) in a 37°C water bath for 2 hours (h). For long-term inhibition, R406 was added to cell culture medium at a final concentration of 1 μM and cells were maintained in an incubator at 37°C for 24 h. The chemical pan-PI3K inhibitor, LY294002, was purchased from Sigma-Aldrich (Saint Louis, MO, USA), The chemical SYK inhibitor, GS-9973 (entospletinib), the PI3K isoform-predominant inhibitors, GDC-0941 (pictilisib, PI3K α/δ>β/γ), CAL101 (idelalisib, d) and IPI145 (duvelisib, δ/γ) and the BTK inhibitor, PCI-32765 (ibrutinib) were purchased from Selleckchem (Houston, TX, USA). DLBCL cell lines were treated with GS-9973 (2 μM), LY294002 (10 μM), GDC-0941 (0.5 μM), CAL101 (2 μM), IPI145 (1 μM), PC1-32765 (0.1 μM) or vehicle (DMSO) for 24 h as previously described.9 (link) The doses of SYK, PI3K and BTK inhibitors used in these studies were determined based on prior analyses of the respective agent EC50s of these agents;9 (link) the LY294002 dose was chosen based on previously reported studies.3 (link),16 (link) Following treatment with chemical SYK, PI3K or BTK inhibitors, cells were harvested for additional analyses (below).
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3

Culturing T-ALL Cell Lines

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Human T-ALL cell lines Jurkat and Loucy (PTEN deleted), DND-41 and ALL-SIL (PTEN non deleted) were cultured in RPMI-1640 medium (Life Technologies Italia, Monza, Italy) supplemented with 10–20% fetal bovine serum (Life Technologies), 100 U/ml penicillin and 100 μg/ml streptomycin (Sigma-Aldrich, Saint Louis, MO, USA) at 37°C in a humidified atmosphere of 5% CO2. PI3K inhibitors BKM-120, PIK-90, ZSTK-474, A-66, TGX-221, AS-605240, CAL-101 and IPI-145, the caspase inhibitor z-VAD and the autophagy inhibitor 3-MA, were from Selleck Chemicals (Houston TX, USA).
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4

Trametinib and inhibitor evaluation

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Trametinib (GSK1120212), MK2206 (PubChem compound database (CID, 24964624)), GDC0032 (25 (link)), TGX221 (26 (link)), BYL710 (25 (link)) and IPI145 (25 (link)) were purchased from Selleck Chemicals (Houston, TX). Recombinant human HGF was purchased from PeproTech (Rocky Hill, NJ) and used at 10 ng/ml based on our previous studies (20 (link)). The neutralizing and internalizing anti-cMET antibody, LY2875358, and the cMET/RON inhibitor, LY2801653 (27 ), were provided by Eli Lilly and Company (Indianapolis, IN).
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5

DLBCL Cell Line Culture and Drug Treatment

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The ABC DLBCL lines TMD8, HBL1, OYB, U2932, SUDHL2, and TK, and the GCB-DLBCL lines BJAB, OCI-Ly1, and OCI-Ly8 were grown in RPMI 1640 plus 20% FBS plus Pen/Strep. ABC DLBCL lines OCI-Ly10, OCI-Ly3 and DLBCL2 were grown in RPMI 1640 plus 20% heparinized human plasma plus Pen/Strep. Cell lines were previously engineered to express an ecotropic retroviral receptor and a bacterial tetracycline repressor [4 (link)]. All drugs (PRT062607, Dasatinib, BYL719, CAL-101, IPI-145, TGX221, CZC24832) were obtained from Selleckchem and diluted in DMSO.
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6

Inhibitor Effects on Pmel-1 T Cell Activation

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Splenocytes were collected from both male and female pmel‐1 TCR‐transgenic mice ages 8 to 14 weeks and stimulated with 1 μM hgp100 peptide (GenScript) in 24 well plates. Three hours post‐TCR stimulation, splenocytes were treated with 200 IU rhIL‐2 (NCI) and either vehicle (DMSO) or 10 μM CAL‐101, TGR‐1202, IPI‐145, or IPI‐549 (Selleckchem). For experiments analyzing the effects of PI3K inhibition during T cell priming, PI3K inhibitors were added 24 h post‐TCR stimulation. During ex vivo expansion, cells were given 200 IU rhIL‐2 and media containing vehicle or respective inhibitor on Days 3–6.
Human donor peripheral blood was obtained from the Sylvan N. Goldman Oklahoma Blood institute. Pan‐T cell isolation was conducted using a negative bead selection protocol (Invitrogen). T cells were stimulated at a 1:1 ratio with anti‐CD3/CD28 beads (Gibco) with 200 IU rhIL‐2 and either vehicle or 10 μM of respective inhibitor. Day 2 postactivation, T cells were magnetically debeaded and transduced with a lentivirus containing a mesothelin‐specific CAR containing CD3ζ and 4‐1BB signaling domains (Gift, Carl June) [54]. Cells were expanded for a total of 14 days in the presence of vehicle or 10 μM of respective inhibitor and 200 IU rhIL‐2 was added daily.
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7

Signaling Pathway Inhibition in Hematology

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Nelarabine, ZSTK-474, IPI-145, trametinib, CCI-779, and ABT199 were kindly provided by Selleckchem (Houston, TX, USA). Ara-G, insulin, transferrin, sodium selenite (ITS), propidium iodide (PI), AMD3100, and LY294002 were purchased from Sigma-Aldrich (St. Louis, MO, USA). For western blotting analysis, all the primary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA) except for the antibodies to CXCR4 and p-CXCR4 (Ser339) which were from Abcam (Cambridge, UK) and antibodies to dGK and dCK which were from Thermo Scientific (Thermo Scientific, Waltham, MA, USA). AlexaFluor@-conjugated antibodies were from Cell Signaling Technology or BD Biosciences (Franklin Lakes, NJ, USA).
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8

Murine and Human T Cell Priming with PI3K Inhibitors

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Splenocytes were collected from both male and female pmel-1 TCR-transgenic mice ages 8 to 14 weeks and stimulated with 1 μM hgp100 peptide (GenScript) in 24 well plates. Three hours post-TCR stimulation, splenocytes were treated with 200 IU rhIL-2 (NCI) and either vehicle (DMSO) or 10 μM CAL-101, TGR-1202, IPI-145, or IPI-549 (Selleckchem). For experiments analyzing the effects of PI3K inhibition during T cell priming, PI3K inhibitors were added 24 h post-TCR stimulation. During ex vivo expansion, cells were given 200 IU rhIL-2 and media containing vehicle or respective inhibitor on Days 3–6.
Human donor peripheral blood was obtained from the Sylvan N. Goldman Oklahoma Blood institute. Pan-T cell isolation was conducted using a negative bead selection protocol (Invitrogen). T cells were stimulated at a 1:1 ratio with anti-CD3/CD28 beads (Gibco) with 200 IU rhIL-2 and either vehicle or 10 μM of respective inhibitor. Day 2 postactivation, T cells were magnetically debeaded and transduced with a lentivirus containing a mesothelin-specific CAR containing CD3ζ and 4–1BB signaling domains (Gift, Carl June) [54 (link)]. Cells were expanded for a total of 14 days in the presence of vehicle or 10 μM of respective inhibitor and 200 IU rhIL-2 was added daily.
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9

Characterization of Stem Cell Markers

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Anti-phosphorylated and pan, AKT, and MAPK antibodies, as well as PI3Kγ were purchased from Cell Signalling Technology (Cambridge, MA, USA). Anti-CD34-PE, anti-CD90-FITC, anti-CD73-PE, anti-CD105-APC antibodies as well as SDF-1 were purchased from Miltenyi Biotec (Auburn, CA, USA). Anti-PI3Kδ antibody was purchased from R&D systems (Abingdon, UK). LY294002, CAL101, IPI-145, MK2206 and AZD6224 were obtained from Selleck Chemicals (Tx, USA). All other reagents were obtained from Sigma-Aldrich (St Louis, MO, USA), unless indicated.
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10

Small Molecule Inhibitors Protocol

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Palbociclib (PD0332991) was provided generously by Pfizer, Inc. PD0325901, AZD2014, rapamycin, GDC0032, BYL719, TGX221, IPI145, SCH772984 were purchased from Selleck Chemicals. SL0101 was purchased from Millipore. Collagenase was purchased from Sigma.
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