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6 protocols using mouse monoclonal anti myc 9e10

1

Quantitative Western Blot Analysis

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Western blot analysis was performed using mouse monoclonal anti-HA (3F10; Roche), mouse monoclonal anti-Myc (9E10; Santa Cruz Biotechnology), rabbit monoclonal anti-Myc (ab9106; Abcam), or rabbit polyclonal anti-RAD51 (H-92; Santa Cruz Biotechnology). Primary antibody incubations were followed by incubation with the appropriate species-specific HRP-conjugated or IRDye 800CW secondary antibody (Licor) secondary antibody (Santa Cruz Biotechnology). Detection was performed by ECL (West-Pico chemiluminescent substrate; Thermo-Scientific) or the Licor Odyssey Sa Imaging System. Quantitative analysis of band intensity was performed using NIH ImageJ.
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2

Western Blot Analysis of APCS, Myc, and V5

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Conditioned cell culture supernatants were analyzed by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electrotransfer onto 0.2-µm nitrocellulose membranes using the Mini-Protean and Trans-Blot system (Biorad). Membranes were blocked with 4% skim milk powder dissolved in Tris-buffered saline supplemented with 0.1% Tween (TBS-T) for 1 h at RT and then incubated with sheep polyclonal anti-APCS (AF2558, R&D 1:2000), mouse monoclonal anti-Myc (9E10, Santa Cruz Biotechnology, 1:4000) or mouse monoclonal anti-V5 (#R960-25, Thermo Fisher Scientific, 1:10,000) primary antibody (diluted in blocking buffer) overnight at 4 °C. Subsequently, blots were washed and probed with horseradish peroxidase-conjugated anti-mouse (Cell Signaling) or anti-sheep (R&D) secondary antibody diluted 1:10,000 in blocking buffer for 1 h at RT. Immuno-reactive bands were visualized using chemiluminescence development (Immobilon ECL detection reagent, Merck Millipore) and the Fusion FX7 imaging system (Vilber Lourmat).
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3

Antibody Labeling and Detection

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Rat monoclonal (3F10) antibody directed against the HA epitope was from Roche Applied Science. Mouse monoclonal anti-GST (B-14) and mouse monoclonal anti-Myc (9E10) antibodies were from Santa Cruz Biotechnology, Inc. Rat monoclonal antibody directed against α-tubulin (YOL1/34) was from Serotec Ltd. UK. Alkaline phosphatase (AP)-conjugated goat anti-mouse immunoglobulin G (IgG), AP-conjugated rabbit anti-rat IgG and TRITC-conjugated rabbit (or goat) anti-rat IgG secondary antibodies were all from Sigma.
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4

Comprehensive Immunoblotting Antibody Panel

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Mouse monoclonal anti-ACTB/β actin (Sigma-Aldrich, A2228), monoclonal anti-BCL2 (Santa Cruz Biotechnology, sc-7382), polyclonal anti-AMBRA1 (Novus, 26190002), monoclonal anti-AMBRA1 (Santa Cruz Biotechnology, sc-398204), mouse monoclonal anti-CYCS (Assay designs-Enzo Life Sciences, 6H2-B4), polyclonal anti-LC3 (Cell Signaling Technology, 2775), monoclonal anti-SQSTM1/p62 (Santa Cruz Biotechnology, sc-28369), polyclonal anti-activated BAX (6A7; Abcam 5714), polyclonal anti-BAX (Santa Cruz Biotechnology, sc-493, N-20), polyclonal anti-PARP1 (Cell Signaling Technology, 9542), goat anti-BAK1 (G-23; Santa Cruz Biotechnology, sc-832), mouse monoclonal anti-MYC (9E10; Santa Cruz Biotechnology, sc-4), mouse monoclonal anti-Flag (Sigma-Aldrich, F3165), rabbit polyclonal anti-SOD2/MnSOD (Enzo Life Sciences, 110F) and mouse monoclonal anti-TUBB/β tubulin (Sigma-Aldrich, T9026).
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5

Immunofluorescence Staining of Cardiomyocytes

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Adult ventricular cardiomyocytes were infected at an MOI of 5 as for live imaging and kept in storage solution in a humidified incubator at 37°C, 5% CO2. At 48 hours an aliquot was taken and paraformaldehyde to a final concentration of 4% was added, at 10 minutes, cells were pelleted (200rpm, 2min) in a benchtop centrifuge, washed with 1xPBS and resuspended in PBS. Cells were spun (Cytospin, Thermo Scientific) onto glass slides, and ringed with a PAP pen (Sigma). Permeabilisation with 0.1% Triton-X-100 in Tris Buffered saline for 10 minutes at room temperature was followed by blocking (0.2% albumin in permeabilisation buffer) for 20 minutes. Primary antibodies (mouse monoclonal 9E10 anti-myc (Santa-Cruz), and rabbit polyclonal anti-DsRed (Clontech) were diluted 1:200 in blocking buffer. Three hours after primary incubation cells were washed in permeabilisation buffer, and counter stained with Alexa-488 anti-mouse, and Alexa-568 anti-rabbit fab fragment secondaries (Invitrogen), nuclear counterstaining was with Topro3 (Invitrogen), for an hour before washing and mounting (Vectashield, Vector labs). Images were acquired on a Leica SP5 confocal microscope with a 63x oil immersion lens. hSC-CM’s were plated onto 0 thickness coverglass, infected at an MOI of 5. Cells were fixed and stained 48 hours after infection as above.
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6

Immunoblotting Analysis of CNOT Complex

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Cells were washed once with PBS and resuspended in NP-40 lysis buffer (20 mM Tris/HCl pH 7.5, 150 mM NaCl, 1 mM phenylmethylsulfonylfluoride, 10 mM NaF, 0.5 mM sodium orthovanadate, leupeptin (10 µg/ml), aprotinin (10 µg/ml), 1% (v/v) NP-40 and 10% (v/v) glycerol). After incubation for 20 min on ice, cells were centrifuged for 10 min at 13000 rpm to remove the insoluble fraction and the supernatant was transferred to a new tube. SDS sample buffer was added and the extracts were heated for 5 min at 95 °C, followed by separation of proteins using SDS-PAGE and Western blotting as previously described73 (link). The following antibodies were used for immunoblotting: rabbit polyclonal anti-CNOT1 (kind gift of Dr. Elisa Izaurralde), mouse monoclonal (2191C2a) anti-CNOT2 (Santa Cruz), rabbit polyclonal anti-CNOT3 (self-made), mouse monoclonal (9E10) anti-Myc (Santa Cruz) and mouse monoclonal (Tub2.1) anti-Tubulin (Sigma Aldrich).
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