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Imager a1 microscope

Manufactured by Zeiss
Sourced in Germany, United Kingdom

The Imager A1 is a high-resolution microscope designed for advanced imaging applications. It features a robust construction and a modular design, allowing for seamless integration with a variety of accessories and imaging techniques. The Imager A1 provides consistent and reliable performance, making it a suitable choice for researchers and scientists in various fields of study.

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36 protocols using imager a1 microscope

1

Cellular Uptake of DiI-Labeled LDL

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Differentiated and nondifferentiated FL-MSCs were incubated with 5 μg/mL Dil (1,10-dioctadecyl-1′-3,3,3′,3′-tetramethyl-indo-carbocyaninperchlorate) conjugated to LDL (Biomedical Technologies) for 3 hours at 37°C and then washed 3 times with serum-free medium and 3 times with PBS 1x. Thereafter, cells were fixed with 3% paraformaldehyde for 2 min and mounted with fluoromount medium. Red fluorescence was assessed using Imager A1 microscope (Carl Zeiss) and digital images were acquired using Axiovision Software.
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2

Immunostaining of Tight and Adherens Junctions

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16HBE cells grown on glass coverslips were washed with PBS and fixed in 3.7% (vol/vol) formaldehyde (Sigma-Aldrich) in PBS for 10 min at room temperature. For immunostaining, coverslips were washed three times in PBS and blocked with BTPA buffer (0.5% BSA, 0.02% sodium azide, and 0.25% Triton X-100 in PBS) for 30 min. After blocking, coverslips were incubated with primary antibodies against ZO-1 and E-cadherin (diluted in BTPA buffer) for 1 h at room temperate and washed three times in PBS for 5 min. Coverslips were then incubated with secondary antibodies and Hoechst (diluted in BTPA buffer) for 1 h at room temperature, washed three times in PBS for 5 min, and mounted onto microscope slides (Thermo Fisher Scientific) using fluorescent mounting media (Dako). Epifluorescence images were acquired with an upright Imager.A1 microscope (ZEISS), equipped with an EC-Plan-NEOFLUAR 40×/0.75 objective and a Hamamatsu Photonics Orca-ER 1394 C4742-80 camera, controlled by Axiovision software (ZEISS). Scale bars were added using ImageJ (National Institutes of Health).
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3

Quantifying Sperm Counts in Worm Testes

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Intact testes (Figure 3a) from male worms of different ages and STS treatments were dissected out in PBS and fixed in 0.5% paraformaldehyde at 4°C overnight. The intact testes were then transferred to a new microscope slide and stained with Hoechst 33342 (1 μg/ml) to visualize nuclei. Images of sperm were taken under a ZEISS Imager A1 microscope. Total numbers of sperm per testis were counted manually from the captured images. Ten to 12 intact testes were used for sperm counts for each group.
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4

Quantifying Cellular Proliferation in Tissue

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Ki67 stained sections (n = 6/group) were scanned using a Zeiss Imager A1microscope, fitted with a Prior Proscan II automatic stage (Zeiss, UK). For each scanned image 20 random fields were automatically selected by the programme and a 28 × 20 point grid was applied using Image Pro Plus 7.0 software. There were a total of 560 points (intersections of the grid) per field categorized as: (i) stained (positive) stromal cells, (ii) stained (positive) glandular cells, (iii) unstained (negative) stromal cells, (iv) unstained (negative) glandular cells and (v) all other points not overlaying any cells (e.g. empty slide space, lumen, connective tissue or blood). Points not overlaying a cell were excluded from analysis. The proportion of tissue in which each of the categorized cell type occupied was expressed as a percentage of total calculated area; cell proliferation index.
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5

Imaging Wing Scales with Microscopy

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The wing scales were imaged on a Zeiss Axio Imager A1 microscope.
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6

Fungal Microscopy Examination Protocol

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All fungal structures were examined by light microscopy, using an Olympus BX50 or Zeiss Axio imager A1 microscope. Distilled water and lactic acid were used as mounting media, and aniline blue (cotton blue) was used to stain colourless structures. If possible, measurements of 30 conidia and other structures were made at a magnification of × 1 000, and the 95 % confidence intervals were determined (extreme values in parentheses).
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7

Quantitative Microscopic Analysis of Samples

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The results are shown as the means ± the SEM. The statistical analysis was performed with Student’s t-test or two-way ANOVA unless otherwise indicated. Significance was accepted at P < 0.05. For the quantitative analysis, all samples were evaluated at 200x magnification using an Imager A1 microscope (Zeiss) equipped with a digital camera (AxioCam MRc 5, Zeiss) and an image analyser (Image-Pro PlusTM, Media Cybernetics, Silver Spring, MD, USA). The integrated optical density (IOD) was calculated for arbitrary areas in 10 fields with a standard area (0.04 mm2/field) per slide. Five sections were analysed per animal. The data obtained from the different experimental groups were analysed and scored blindly.
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8

Microscopic Analysis of Nuclear and Tubulin Dynamics

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The following strains were incubated to mid-logarithmic phase with shaking (200 rpm) in YPD medium at either 30°C or 37°C, with or without the addition of 0.125 μM nocodazole: strains CNV108 (WT + GFP-Histone H4), CBN242 (WT + GFP- Tub1), CBN593(cdc420Δ + GFP-Histone H4), and CBN589 (cdc420Δ + GFP- Tub1). Nuclear size and division (noted by GFP-H4) and tubulin filaments (GFP-Tub1) were assessed using a Zeiss Axio Imager A1 microscope equipped with an Axio-Cam MRmdigital camera. Cells were imaged by DIC and with eGFP filter. Identical exposure times were used to image all cells. Fiji software [112 (link)] was used to process images.
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9

Isolation of Cryptococcus from Zebrafish

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Zebrafish were euthanized in fish water containing 300 µg/ml tricaine, washed 2 times with PBS, and transferred individually to a 2-ml screw-cap tube with an O-ring. To each tube, a 6.35-mm steel bead and 1 ml of PBS were added. Fish were homogenized by a 15-s pulse using a Mini-Beadbeater-16 (BioSpec Products). To isolate Cryptococcus cells for imaging of capsule and cell size, a monoclonal antibody (kindly provided by Arturo Casadevall) was labeled with goat anti-mouse IgG magnetic beads (New England Biolabs catalog no. S1431S) according to the manufacturer’s instructions. The magnetic beads coated with the 18B7 antibody were diluted such that few beads were observed per yeast cell. The magnetic beads were incubated with the fish lysate at room temperature for 5 min, and beads were separated to the side of the tube for 5 min. The lysate was removed, and beads were washed 3 times with 1 ml of PBS. The beads were resuspended in 20 µl of PBS. Samples were prepared with India ink staining and imaged on a Zeiss Axio Imager A1 microscope with an AxioCam MRM digital camera. Image analysis was performed using ImageJ software.
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10

Hyphal Microscopy and Conidiophore Imaging

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For hyphal microscopy, conidia were inoculated onto precleaned glass coverslips overlaid with MMPDR liquid media. The strains were grown on coverslips at 37°C for various durations prior to observation under a microscope. The DNA was stained using 4,6-diamidino-2-phenylindole (DAPI) after fixing the cells with 4% paraformaldehyde (Polyscience, Warrington, PA) (42 (link), 43 (link)). Differential interference contrast (DIC) images and fluorescent images of the cells were collected using a Zeiss Axio imager A1 microscope (Zeiss, Jena, Germany).
For observation of conidiophore structure, the slide culture method for microscopic observation was performed as previously described (31 (link), 44 (link)), with a few modifications. Conidia were inoculated on the edge of a small square of agar medium placed on top of a coverslip, which was placed in a petri dish containing solidified agar to keep it moist. Another coverslip was placed on top of the agar square after inoculation. The coverslips with aerial hyphae and attached conidiophores were imaged using a SensiCam QE cooled digital camera system (Cooke Corporation, Germany) and analyzed with the MetaMorph/MetaFluor combination software package (Universal Imaging, West Chester, PA).
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