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Esquire 3000 plus mass spectrometer

Manufactured by Bruker
Sourced in Germany, France, United States

The Esquire 3000 plus mass spectrometer is a high-performance instrument designed for analytical applications. It utilizes ion trap technology to provide precise mass analysis and detection of a wide range of compounds. The core function of this mass spectrometer is to accurately measure the mass-to-charge ratio of ionized molecules, enabling the identification and characterization of various chemical species.

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11 protocols using esquire 3000 plus mass spectrometer

1

Characterization of Human Cancer Cell Lines

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Human cancer cell lines SW480, A431, A549 and NCI-H1975 were purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). Dulbecco’s Modified Eagle’s Medium (DMEM) and foetal bovine serum (FBS) were purchased from Gibco. Trypsin, penicillin, streptomycin and L-glutamate were purchased from Sigma-Aldrich. All other reagents and solvents were at analytical grade; they were supplied by local commercial suppliers and used without further purification unless otherwise noted.
Melting point (m.p) was determined using a X-6 micromelting point apparatus (Beijing Tech Instrument Co. Ltd., Beijing, China). NMR (1H and 13 C) spectra were obtained using a Super-conducting Fourier Digital NMR spectrometer 300, 400, 600 MHz (BrukerAvance III) instrument at r.t., and chemical shifts were reported in parts per million (ppm, d) downfield from tetramethylsilane (TMS). Coupling constants (J) were reported in Hz. Spin multiplicities were described as s (singlet), brs (broad singlet), d (double), t (triplet), q (quartet), and m (multiplet). Infrared Spectroscopy (IR) was measured on Nicolet 170SXFT-IR instrument. The high-resolution mass spectra (HRMS) were measured using Bruker Esquire 3000plus mass spectrometer.
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2

HPLC-MS Analysis of Plant Glycosides

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The glycosides were identified according to the method described in53 (link). The LC System (quaternary pump and variable wavelength detector) were all from Agilent 1100 (Bruker Daltonics, Bremen, Germany). The glycosides were separated by a LUNA C18 100 A 150 × 2 mm (Phenomenex, Aschaffenburg, Germany) with a flow rate of 0.2 ml/min. Sotolone and maple furanone were monitored at 232 nm, furaneol and homofuraneol at 280 nm. The binary gradient system consisted of solvent A, water with 0.1% formic acid and solvent B, 100% methanol with 0.1% formic acid with following gradient program: 0–3 min: 0–50% B; 3–6 min: 50–100% B; 6–14 min: 100% B; 14–14.1 min: 100–0% B; 14.1–25 min: 0% B. The mass spectra was monitored by a Bruker esquire 3000 plus mass spectrometer with an ESI interface. The ionization voltage of the capillary was 4000 V and the end plate was set to −500 V.
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3

Proteomic Profiling of Crude Venom

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The crude venom extract was solubilised in Acetonitrile: Water mix and filtered using a 0.2 μM filter. ESI-MS (Esquire 3000-plus mass spectrometer- Bruker Daltonics, Germany) was performed on the extract to discover the peptide components in the venom complex (Rajesh, 2015 (link), Rajesh et al., 2019 (link)). The crude venom components were separated in HPLC (Agilent 1100 series) using an analytical HPLC column [Agilent Zorbax analytical C18 column, 150 × 4.6 mm, 5 µm, 90 Å pore size] with a binary gradient solvent system (H2O with 0.1% TFA): (acetonitrile with 0.1% TFA) at a flow rate of 0.2 mL min−1. Data acquisition was performed over m/z 100–2000 in positive ion mode. All MALDI-TOF analysis was performed in Ultraflextreme MALDI-TOF-TOF (Bruker Daltonics, Germany) with CCA being the matrix (Rajesh, 2015 (link), Rajesh et al., 2019 (link)).
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4

Mass Spectrometry of Compounds

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Mass spectrometry data were obtained in the positive ion mode using an Esquire 3000 Plus mass spectrometer (Bruker Daltonics), coupled with the HPLC instrument. The eluent was the same used in the HPLC analysis with the addition of 2% (v/v) formic acid to solvent A. Samples were introduced into the electrospray source at 70 μL/min. Capillary voltage was set at 4 kV, with a temperature of 250 °C. The nebulizer, dry gas, and dry temperature were set at 20 psi, 7.0 L/min, and 325 °C, respectively.
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5

Phenolic Profiling of A. nordenskioeldii

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The phenolic compounds of A. nordenskioeldii were extracted and analysed according to [11 (link)]. Briefly, 20% ethanol extracts were characterized by liquid chromatography mass spectrometry (LC-MS) with an Agilent ChemStation 1100, equipped with a Synergy Hydro column 4 µm column (Phenomenex) and a diode array detector set at 280 nm, coupled with an Esquire 3000plus mass spectrometer with electrospray ionization (Bruker Daltonics, Bremen, Germany).
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6

UPLC-MS/MS Phenolic Compound Analysis

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Phenolic compound analyses were carried out using a 1290 Infinity UPLC (Agilent Technologies, Les Ulis, France). The UPLC system was coupled to an Esquire 3000 plus mass spectrometer from Bruker Daltonics (Wissembourg, France). Five µL was injected into a column Zorbax SB-C18 (2.1 × 100 mm, 1.8 µm) (Agilent Technologies, Les Ulis, France). Two different solvents were used as a mobile phase: solvent A (water/formic acid 99.9:0.1, v/v) and solvent B (acetonitrile/formic acid 99.9:0.1, v/v), at a flow rate of 0.4 mL/min and a gradient as follows in solvent A: 0 min 1% B, 0.4 min 1% B, 2 min 10% B, 6 min 35% B, 7 min 50% B, 8.8 min 70% B, 10.8 min 92% B, 11 min 100% B, 12 min 100% B, 12.2 min 1% B, and 15.2 min 1% B. The MS/MS parameters were set as follows: negative mode; capillary tension +4000 V; nebulizer 40 psi; dry gas 10 L/min; dry temperature 365 °C; and scan range m/z 100 to 1400. Data were processed using HyStar 3.2 software (Bruker Daltonics, Wissembourg, France).
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7

Phenolic Compounds Analysis by UPLC-MS/MS

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Phenolic compounds analyses were carried out using a 1290 Infinity UPLC from Agilent Technologies. The UPLC system was coupled to an Esquire 3000 plus mass spectrometer from Bruker Daltonics (Wissembourg, France). 5 μL were injected into a Zorbax SB-C18 column (2.1 × 100 mm, 1.8 μm) from Agilent Technologies. Two different solvents were used as a mobile phase: solvent A (water/formic acid 99.9:0.1 v/v) and solvent B (acetonitrile/formic acid 99.9:0.1 v/v), at a flow rate of 0.4 mL/min and a gradient as follows in solvent A: 0 min 1% B, 0.4 min 1% B, 2 min 10% B, 6 min 35% B.7 min 50% B, 8.8 min 70% B, 10.8 min 92% B, 11 min 100% B, 12 min 100% B, 12.2 min 1% B, 15.2 min 1% B. The MS/MS parameters were set as follows: negative mode; capillary tension +4000 V; nebulizer 40 psi; dry gas 10 L/min; dry temperature 365 °C; and scan range m/z 100 to 1400. Data were processed using HyStar 3.2 software (Bruker Daltonics).
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8

NMR and Mass Spectrometry Analysis

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1H NMR, 13C NMR, and DEPT spectra were recorded at 500 MHz for 1H and at 125 MHz for 13C, with a Bruker DRX 500 instrument in DMSO-d6 solution. ESI-MS spectra were recorded on a Bruker Esquire 3000plus mass spectrometer, using a negative ion probe with samples dissolved in methanol.
1,1-Diphenyl-2-picrylhydrazyl (DPPH), ferrozine, and Folin-Ciocalteu reagent were purchased from Sigma Aldrich Co (St. Louis, MO, USA). The reference standard Pycnogenol (Maritime Pine Extract, containing 673 mg proanthocyanidins per g material) was purchased from the United States Pharmacopeial Convention (Rockville, MD, USA). The reference standards gallic acid (purity ≥ 98%), rutin (purity ≥ 98%), proanthocyanidins (purity ≥ 95%), and ascorbic acid (purity ≥ 99%) were purchased from Internet Aladdin reagent database Inc. (Shanghai, China). The detection kits for protein content, total antioxidative capacity (T-AOC), superoxide anion free radical, hydroxyl free radical and malondialdehyde (MDA), aspartate aminotransferase (AST), alanine aminotransferase (ALT), superoxide dismutase (SOD), and reduced glutathione (GSH) were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, Jiangsu, China). All other reagents were of analytical grade and made in China.
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9

Glycopeptide Separation and Analysis by HPLC-MS/MS

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Glycopeptide mixtures were separated by the Prominence HPLC system (Shimazu, Kyoto, Japan) using a PEGASIL ODS 3 μm 1 mm i.d. × 100 mm column, and by the mobile phase of 0.1% formic acid (FA) and acetonitrile containing 0.1% FA with linear gradient mode at room temperature. The flow rate was 50 μL/min, and the detection was performed on an Esquire 3000 plus mass spectrometer equipped with an electrospray ionization interface (Bruker Daltonics GmbH, Bremen, Germany). The mass spectrometric parameters were as follows: polarity = positive ion mode, ion source gas (nitrogen) pressure = 10 psi, dry gas = 4.0 L/min, dry temperature = 250 °C and scan range = from 400 to 2000 m/z. In MS/MS experiments, the precursor isolation window was set to ±2 Da, and He was used as the collision gas. The operation was carried out on trapControl software and data were acquired and processed with Compass DataAnalysis (Bruker Daltonics GmbH, Bremen, Germany).
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10

Synthesis and Characterization of LHX-B-CPT Compound

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All reagents were of analytical
grade, purchased from major suppliers, and applied directly in the
experiment without further drying or purification. Deionized water
was used throughout all of the experiments, and the pH was adjusted
using a dilute sodium hydroxide solution or hydrochloric acid. All
chemicals were obtained from major suppliers such as Sangon (Shanghai),
Alfa Aesar (Tianjin), Sigma-Aldrich (Beijing), and J&K (Guangzhou)
and used as received. All fluorescence spectra were measured using
an F-7000 fluorescence spectrophotometer (Hitachi). The 1H nuclear magnetic resonance (NMR) spectra were obtained at 500 MHz
on a Bruker Advance-500 spectrometer with tetramethylsilane (TMS)
as the internal standard. Mass spectral analysis was performed with
a Bruker Esquire 3000 plus mass spectrometer. All of the measurements
were made at room temperature (25 °C). Fluorescence images of
KB cells were taken on an Olympus FV1000-MPE multiphoton laser scanning
confocal microscope (Japan). The efficient synthesis of compound LHX-B-CPT
following the synthetic methodology is summarized in the Supporting Information.
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