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Hispur ni nta superflow agarose

Manufactured by Thermo Fisher Scientific
Sourced in United States

HisPur™ Ni-NTA Superflow Agarose is a nickel-charged agarose-based resin designed for the purification of recombinant proteins containing a polyhistidine (His) tag. It is a high-performance affinity resin suitable for both small-scale and large-scale protein purification applications.

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19 protocols using hispur ni nta superflow agarose

1

Recombinant 14-3-3 Protein Expression

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LvRab11, 14-3-3ES and 14-3-3EL were cloned into the pET-28a (+) vector (Novagen) that already contained an N-terminal 6xHis tag. The protein was expressed in Escherichia coli strain BL21 (DE3) and purified using HisPur Ni–NTA Superflow Agarose (Thermo Scientific) following the manufacturer’s instructions. GST-fusion 14-3-3ε proteins were subcloned into the pGEX-4T-1 vector (Amersham Biosciences). The recombinant GST-14-3-3EL and GST-14-3-3ES proteins were produced in E. coli strain BL21 and purified using Glutathione Sepharose 4 Fast Flow (GE Healthcare) following the manufacturer’s instructions. Purified recombinant proteins were analysed by SDS-PAGE. The protein concentration was measured with a dye-binding assay by the Bradford method and stored at − 20 °C.
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2

Purification of Truncated DDX3X Protein

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The pNIC28 vector
bearing the complete sequence of the wild-type DDX3X protein and an
N-terminal His-tag with a TEV cleavage site (Supporting Information, Figure S1) was a gift from Dr. Helena Berglund
at the Karolinska Institute. The wild-type DDX3X contains 662 amino
acids and consists of the N-terminal domain, catalytic core, and C-terminal
domain (Supporting Information, Figure S1). We substituted the sequence of amino acid 583 in the DDX3X coding
sequence with that of a stop codon. Hence, our DDX3X construct lacks
80 C-terminal residues. Protein expression and purification were carried
out as specified by Högbom et al.13 (link) In brief, the DDX3X construct bearing an N-terminal His-tag was
expressed in Escherichia coli C2566I
(NEB). Nickel affinity column (HisPur Ni-NTA Superflow Agarose, Thermo
Scientific) and size-exclusion column (Sephacryl S-200HR, GE Healthcare
Lifesciences) were used to purify the protein. The His-tag was not
removed from DDX3X. The protein was stored at −80 °C in
small aliquots, which were thawed only once before use and were never
refrozen.
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3

Purification of SARS-CoV-2 nsp10/nsp16 Complex

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The nsp10/nsp16 complex was expressed and purified using our standard protocols as described previously [19 (link)]. Briefly, E. coli BL21 DE3 cells were transformed with the expression vector and grown at 37 °C in the LB medium supplemented with 25 µM ZnSO4. At OD600 of 0.5, the protein expression was induced by 300 µM IPTG and the protein was expressed overnight at 18 °C. Bacterial cells were harvested and lysed by sonication in the lysis buffer (50 mM Tris pH 8, 300 mM NaCl, 5 mM MgSO4, 20 mM imidazole, 10% glycerol, 3 mM β-mercaptoethanol). The lysate was precleared by centrifugation and incubated with the HisPur Ni-NTA Superflow agarose (Thermo Fisher Scientific), and the bound proteins were extensively washed with the lysis buffer. The protein was eluted with the lysis buffer supplemented with 300 mM imidazole, dialyzed against the lysis buffer and digested with the Ulp1 protease at 4 °C overnight. The cleaved SUMO tag was removed by another incubation with the NiNTA agarose. Finally, the proteins were purified using the size exclusion chromatography at HiLoad 16/600 Superdex 200 prep grade column (GE Healthcare, Chicago, IL, USA) in the storage buffer (10 mM Tris pH 7.4, 150 mM NaCl, 5% glycerol, 1 mM TCEP).
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4

Affinity Purification of Tagged Protein

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The GP46F13-His tagged protein from 250 ml culture was immobilized in 1 ml of HisPur™ Ni-NTA Superflow Agarose (Thermo Scientific™) applied to 5-ml PP columns (GE Healthcare) and rinsed with column buffer (50 mM Tris–HCl pH 8, 500 mM NaCl, 20 mM imidazole). Then, crude cell lysates of IL1403 host cells at 0, 5, 10, 15 min after infection with phage F13 were added and incubated overnight at 4°C. After excessive washing with 100 volumes of column buffer, the protein content bound to the resin was analyzed using mass spectrometry in the Mass Spectrometry Lab at IBB PAS.
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5

MAPK Signaling Pathway Analysis

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The anti-His-tagged, anti-IκBα, anti-IL-1β, anti-PCNA, MAPK Family Antibody Sampler Kit and Phospho-MAPK Family Antibody Sampler Kit were supplied by Cell Signaling Technology (Beverly, MA, USA). Antibodies against p65 and actinin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). BMS-345541, TPCA-1, SC-514, and SP600125 were purchased from Selleckchem. 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), Isopropyl β-d-1-thiogalactopyranoside (IPTG) and imidazole were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Human Inflammatory Response and Autoimmunity RT2 Profiler™ PCR Array (PAHS-077ZA-6) was purchased from Qiagen (Valencia, CA, USA). All human and mouse cytokines ELISA kits were obtained from eBioscience (San Diego, CA, USA). Zeba™ spin desalting columns, HisPur Ni-NTA superflow agarose, high-capacity endotoxin removal spin columns and LAL chromogenic endotoxin quantitation kit were purchased from Thermo Scientific (Rockford, IL, USA). Rosetta™ 2 (DE3) pLysS competent cells were obtained from EMD Millipore Corporation (Billerica, MA, USA).
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6

Purification of ChiIV3 Protein from E. coli

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To induce the expression of ChilV3 protein, the construct pET32a-ChiIV3 was introduced into E. coli BL21 cultivated in Luria Bertani (LB) media. IPTG (1 mM) was added and cells were harvested 4 h after the addition of IPTG. Following treating with 1 mg/mL lysozyme, the suspension ChiIV3 protein was incubated on ice for 1 h and then sonicated for 1 h to break the cells. The prokaryotic expressed ChiIV3 was purified with HisPur Ni-NTA Superflow Agarose (Thermo; http://www.thermo.com.cn) and detected by SDS-PAGE.
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7

Purification and Antibody Generation of Dlish

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The full length dlish cDNA was amplified from pUAST-attB-Dlish-FLAG, in-fusion cloned into pET-28b(+) (Invitrogen), transformed into BL21(DE3)pLysS E. coli competent cells (Promega L1195), and protein expressed induced with 100 μM IPTG at 25°C for 13 hr. His-Dlish protein was purified with HisPur Ni-NTA Superflow Agarose (Thermo 25214), extracted, run on SDS-PAGE, and Coomassie stained. 4–5 mg of His-Dlish protein on the gel was used by Genemed Synthesis Inc. to immunize rabbits. Antiserum was affinity purified using GST-Dlish-coupled Sepharose.
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8

Detailed PARylation Assay Protocol

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For in vitro PARylation assay, MBP-PARP1, MBP-PARP2, HIS-UBC13A, or HIS-UBC13B recombinant proteins were expressed in the E. coli Rosetta strain and purified with Amylose Resin High Flow (NEB) or HisPur™ Ni-NTA Superflow Agarose (Thermo Scientific) according to the manufacturer’s manuals. Five hundred nanograms of MBP-PARP1 or MBP-PARP2 were incubated in 100 μL of PARylation buffer (50 mM Tris-HCl, pH 8.0, 50 mM NaCl, 10 mM MgCl2) with 0.2 mM NAD+, 1× activated DNA (Trevigen), and 1 μg of HIS-UBC13A or HIS-UBC13B at room temperature for 3 h. PARylated proteins were detected by immunoblotting using an anti-pan-ADPR reagent (MABE1016, EMD Millipore).
For in vivo PARylation assay of UBC13B, PDI1, and PDI3, their cDNAs were cloned into pGWB405 with a GFP tag at the C-terminus and expressed in N. benthamiana. Total proteins were extracted and immunoprecipitated with GFP-Trap magnetic beads, eluded with SDS loading buffer, separated on SDS-PAGE, immunoblotted with the anti-pan-ADPR reagent, and detected using SuperSignal West Dura or Femto Chemiluminescent Substrates (Thermo Scientific).
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9

Recombinant Expression and Purification of KLHDC2

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The kelch repeat domain of human KLHDC2 (UniProt: Q9Y2U9, amino acids 22–362) was subcloned into the pET vector with an N-terminally fused His-elongation factor Ts (TSF) and a TEV-cleavage site. The His-TSF-KLHDC2 protein was overexpressed and purified from BL21 (DE3) E. coli cells. Bacterial cells transformed with the pET-based expression plasmid were grown in LB broth to an OD600 of 0.8–1 and induced with 0.5 mM IPTG. Cells were harvested, re-suspended and lysed in lysis buffer (20 mM Tris, pH 8.0, 200 mM NaCl, 20 mM imidazole) in the presence of protease inhibitors (1 μg mL–1 leupeptin, 1 μg mL–1 pepstatin and 100 μM phenylmethylsulfonyl fluoride) using a microfluidizer. The His-TSF-KLHDC2 protein was isolated from the soluble cell lysate by HisPur™ Ni-NTA Superflow Agarose (Thermo Fisher Scientific, Waltham, Massachusetts). After TEV cleavage of the His-TSF, KLHDC2 was further purified by Q Sepharose High Performance resin (GE Healthcare, Chicago, Illinois). The NaCl eluates were subjected to Superdex-200 size-exclusion chromatography (GE Healthcare). All samples were flash frozen in liquid nitrogen for storage prior to use.
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10

Protein-Protein Interaction Analysis

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The interaction among proteins was verified by pulldown assay in vitro. Plasmids pGEX-4T1/A21(BM09280, the A chain of β-BgTx), pET28a/B22(BM19233, the B chain of β-BgTx), pET28a/B22-C55R (ΔBM19233 with a C55 -> R55), pET28a/Pilp3(BM19206, a Kunitz protein without C55), pET28a/γ-BgTx (BM02014) and pET28a/κ-BgTx (BM19133)were constructed for the expression of certain proteins with GST/His-tag. These proteins were expressed in E. coli and purified by Pierce™ Glutathione-Agarose or HisPur™ Ni-NTA Superflow Agarose (ThermoFisher Scientific). Afterward, 100 μg of each protein was used in each pulldown group. Glutathione-agarose bead volumes were scaled down to 50 μL and run on 4%–12% Bis-Tris gel (Invitrogen). GelCode™ Blue Stain Reagent (ThermoFisher Scientific) was used of visualization.
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