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Oxphos rodent wb antibody cocktail

Manufactured by Thermo Fisher Scientific

The OxPhos Rodent WB Antibody Cocktail is a collection of antibodies designed for the detection of oxidative phosphorylation (OxPhos) proteins in rodent samples. The cocktail contains a mixture of antibodies targeting key subunits of the five OxPhos complexes, allowing for the simultaneous identification of these important cellular components in western blot analysis.

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5 protocols using oxphos rodent wb antibody cocktail

1

Profiling APC Protein Expression

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Flow-sorted CD34+, CD29+, Sca-1+ primary APCs and EVC005 cells (treated with or without 1DSO) were homogenized in RIPA buffer with protease and phosphatase inhibitors. Lysates from primary APCs were run on ProteinSimple JESS instrument for UCP2 (Cell Signaling, 89326), CEPBa (Cell Signaling, 8178), NR2F2 (Cell Signaling, 6434) and DNMT1 (Novus Biologicals, NB100-56519) antibodies. The antibodies used while running the EVC005 lysate were TOM20 (Cell Signaling, 42406), SOD2 (Cell Signaling, 13141), NRF1 (Cell Signaling 46743), HSP90 (Cell Signaling, 4874), OxPhos Rodent WB Antibody cocktail (ThermoFisher, 45–8099) and GAPDH (Cell Signaling, 5174). All antibodies were used at a dilution of 1/50 for JESS westerns. Three microliters of 1.2 mg/mL protein was loaded per well for the JESS assays. Proteins from primary APCs from 6 different SVFs for each condition (high or low n6/n3) were used for each JESS assay.
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2

Protein Expression Analysis in Tissue Samples

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Proteins were extracted from cells, liver tissues, and mitochondria using RIPA buffer (Beyotime) with protease and phosphatase inhibitors (Beyotime). Separated by 8−12% SDS‐PAGE, an equal amount of protein was transferred to PVDF membranes (Millipore, Inc.). After blocking with 5% nonfat dry milk in TBST, primary antibodies were added and left to incubate overnight. These antibodies include anti‐PISD (sc‐390070, 1:500; Santa Cruz, CA), anti‐p‐STAT3 (9145, 1:2000; Cell Signaling), anti‐STAT3 (9139, 1:1000; Cell Signaling), anti‐COX IV (4850, 1:1000; Cell Signaling), anti‐Bcl‐2 (AF6139, 1:1000; Affinity), anti‐Bax (AF0120, 1:1000; Affinity), anti‐cleaved caspase‐3 (AF7022, 1:1000; Affinity), anti‐actin (AF7018, 1:6000; Affinity), and OXPHOS rodent WB antibody cocktail (45‐8099, 1:1000; Thermo Fisher Scientific). The blot was then further incubated with HRP‐conjugated secondary antibodies, either goat anti‐rabbit (S0001; Affinity) or goat anti‐mouse (S0002; Affinity). Finally, proteins were visualized with an enhanced chemiluminescence kit (Bio‐Rad).
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3

BAFF Pathway Activation in B Cells

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B cells were isolated from mouse spleen and 6 million B cells/sample were treated with 5 nM BAFF 3-mer, 60-mer, or left untreated for 3 hours or 24 hours. Alternatively, B cells were treated with 30 nM of the control antibody or the mBaffR-Fc and BAFF proteins. After the treatments, the cells were washed, and total cellular protein was extracted using 1x RIPA buffer containing protease inhibitor cocktail and phosphatase inhibitors (SigmaAldrich). The extracted protein was analyzed using 4-12% Tris-Glycine SDS-PAGE. The primary antibodies used are Phospho-NF-κB p65 (Ser536) Antibody (#3031), NF-κB p65 (D14E12) XP® Rabbit mAb (#8242), NF-κB2 p100/p52 Antibody (#4882), and β-Actin Antibody (#4967) from Cell Signaling Technology, OxPhos Rodent WB Antibody Cocktail (#45-8099) from ThermoFisher Scientific, the IRDye-conjugated secondary antibodies were from LI-COR, and the blots were detected, and band intensities were quantified using LI-COR’s Image Studio software version 5.2.5.
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4

Western Blot Analysis of Telomeric Proteins

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Western blots were performed following standard procedures and employed antibodies specific for TRF2 (Novus Biologicals, NB110‐57130), RAP1 (Cell Signaling, D9H4), Lamin B1 (Santa Cruz Biotechnology, sc‐374,015), and Rhodamine Anti‐GAPDH (BioRad). Briefly, cells were lysed in RIPA buffer containing protease and phosphatase inhibitors (MiniComplete, Roche). Following protein quantitation, 20–40 μg of protein were separated under reducing conditions using SDS‐PAGE and transferred to PVDF membranes. Proteins were blotted with antibodies specific to the desired protein and visualized on a ChemiDoc MP gel documentation system (BioRad). Mitochondrial electron transport chain proteins were identified using the antibody mix and instructions included in the OxPhos Rodent WB Antibody Cocktail (ThermoFisher) according to the manufacturer's protocol.
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5

Protein Quantification by Western Blot

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Separation of isolated proteins was achieved by SDS-PAGE with 12% gels (TGX Stain-Free FastCast Acrylamide Solutions, CAT# 1610185, Bio-Rad) and 20 µg total protein per lane. Total protein was detected for semi-quantification using Stain-Free imaging according to the manufacturer’s instructions (Bio-Rad). Wet transfer was conducted to a PVDF membrane. Membranes were incubated with primary antibodies UCP163 (link), OXPHOS Rodent WB Antibody Cocktail (CAT# 45-8099, Thermo Fisher), DAT (dopamine transporter) (CAT# ab184451, Abcam), MAO-A (monoamine oxidase A) (CAT# ab126751, Abcam), or SERCA2 (sarco/endoplasmic reticulum Ca2+-ATPase) (CAT# 4388, Cell Signaling) overnight at 4 °C. Incubation with a secondary antibody (Polyclonal Goat Anti-Rabbit Ig/HRP, CAT# P0448, Dako; Polyclonal Goat Anti-Mouse Ig/HRP, CAT# P0447, Dako) was performed for 1 h at room temperature, before bands were detected with Clarity Max Western ECL substrate (CAT# 1705062, Bio-Rad) and a ChemiDoc Touch Imaging System (Bio-Rad). Semi-quantitative analysis was performed in Image-Lab (Bio-Rad). Target protein abundance was normalized to total protein.
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