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3 protocols using anti bmal1 antibody

1

Evaluating BMAL1 Expression in Osteoblasts

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OCN and Bmal1 double immunofluorescence staining was performed to evaluate the expression of BMAL1 in osteoblasts. Briefly, decalcified femora were dehydrated in 30% sucrose, embedded in OCT compound and cut into 5-μm-thick sections. After blocking with 5% donkey serum at room temperature for 30 min, the samples were incubated with an anti-BMAL1 antibody (1:100; Abcam; Britain) and an anti-OCN antibody (1:100; Abcam; Britain) overnight at 4 °C. Double-immunofluorescence staining was performed with a Treble-Fluorescence Immunohistochemical Mouse/Rabbit kit (Immunoway, USA) according to the manufacturer’s protocol. The number of BMAL1+ osteoblasts on the trabecular bone surface was calculated in three sections per mouse using ImageJ v1.52 software. The proportion of BMAL+ osteoblasts to total osteoblasts was also calculated.
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2

Bone Tissue Immunohistochemistry for Clock Genes

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For antigen retrieval, bone tissue sections were deparaffinized and rehydrated, immersed in 10 mM citrate buffer (pH 6.0), and microwaved for 15 min. Bone sections were permeabilized with 0.5% Triton X-100 for 20 min and blocked with 10% fetal bovine serum in PBS for 1 h. An anti-BMAL1 antibody (catalog no. ab230822; Abcam), an anti-TTK antibody (catalog no. ab11108; Abcam), an anti-CLOCK antibody (catalog no. ab3517; Abcam), an anti-OCN antibody (catalog no. 29560; Sab), an anti-OCN antibody (catalog no. MAB1419; Novus), or an anti-H2Bub1 antibody (catalog no. 5546; Cell Signaling Technology) was incubated with the samples overnight at 4°C. The secondary antibodies used were anti-rabbit Alexa 488 (catalog no. 2975; Cell Signaling Technology), anti-mouse Alexa 488 (catalog no. 4408; Cell Signaling Technology), anti-rabbit Alexa 555 (catalog no. 4413; Cell Signaling Technology), and anti-mouse Alexa 555 (catalog no. 4409; Cell Signaling Technology). Antifade mounting medium with DAPI (catalog no. P0131; Beyotime) was used for mounting. The samples were viewed under a laser scanning confocal microscope at wavelengths of 488 nm (green, BMAL1, TTK, CLOCK, H2Bub1), 555 nm (red, OCN), and 405 nm (blue, DAPI). Images were captured using a Nikon Eclipse Ni-E confocal microscope.
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3

Isolation and Analysis of Nuclear Proteins

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Nuclear extracts were made from liver according to previously published protocol (52 (link)). Protein concentrations were determined by Bradford assays (Bio-Rad), and aliquots were snap frozen in liquid nitrogen and stored at −80°C until usage. Immunoblot analyses were performed as described previously (53 (link)). Briefly, 25 μg of proteins separated by 4 to ~20% gradient SDS–polyacrylamide gel electrophoresis gels (Bio-Rad) were transferred to nitrocellulose membranes, blocked in TBST buffer supplemented with 5% bovine serum albumin or 5% fat-free milk, and incubated overnight with primary anti-SON antibody (Abcam, 121033), anti-BMAL1 antibody (Abcam, 3350), anti-PERK (Cell Signaling Technology, no. 3192), anti–phospho-PERK (Thr908) (Thermo Fisher Scientific, MA5-15033), anti-ATF4 (Cell Signaling Technology, no. 11815), anti-IRE1α (Cell Signaling Technology, no. 3294), anti–phospho-IRE1α (Ser724) (ABclonal, AP0878), anti-XBP1s (BioLegend, 658802), anti-ATF6 (Santa Cruz Biotechnology, sc-166659), and β-actin (Cell Signaling Technology, no. 12620) at 4°C. Blots were incubated with an appropriate secondary antibody coupled to horseradish peroxidase at room temperature for 1 hour and reacted with Enhanced chemiluminescence (ECL) reagents per the manufacturer’s (Thermo Fisher Scientific) suggestion and detected by the Bio-Rad ChemiDoc MP Imaging System.
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