The largest database of trusted experimental protocols

8 protocols using nt sirna

1

OGR1 Gene Silencing in ASMCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small interfering RNA (siRNA) targeted for OGR1 (OGR1-siRNA) and non-targeting siRNA (NT-siRNA) as a control were purchased from Thermo Fisher Scientific. The ID number was L-005591-00-0005 for OGR1-siRNA and D-001810-10-05 for NT-siRNA. OGR1-siRNA or NT-siRNA was transfected at a final concentration of 3 nM into cells using RNAiMAX reagent (Thermo Fisher Scientific) according to the manufacturer’s instructions. After ASMCs suspended in the complete culture medium without gentamicin and amphotericin B were mixed with siRNA and the RNAiMAX reagent, they were then cultured in 6 or 12-well plates for 48 h before using them in further experiments.
+ Open protocol
+ Expand
2

Silencing SEL1L in human fetal CB660 cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For silencing experiments, the human fetal CB660 cell line (1 × 106 cells) was transiently nucleofected with 100 pmol small interference RNA (siRNA) against the 5′ end of the SEL1L coding sequence and non‐targeting siRNA (NT siRNA) (Ambion, Life Technologies, Monza, Italy) using the Nucleofector® and Amaxa nucleofector kit V (Lonza, Basel, Switzerland). Scrambled siRNAs were used in order to guarantee minimal or no off‐target activity and the reliability of the silenced phenotype.
+ Open protocol
+ Expand
3

siRNA Transfection for Gene Silencing

Check if the same lab product or an alternative is used in the 5 most similar protocols
To prepare siRNA transfection solution for each well of cells in a 24-well plate, 20 pmol of non-targeting control siRNA (NT siRNA) (Ambion, CT, USA, AM4636), siRNA specific for mouse Tet3 (Tet3 siRNA; Ambion, 4390815/s101483), mouse Pgc1a (Pgc1a siRNA; Ambion, 4390771/n253420), human TET3 (TET3 siRNA; Ambion, 4392420/s47239) or human PGC1A (PGC1A siRNA; Ambion, 4392420/s21394) was mixed with 100 μl of OPTI-MEM (Gibco, 31985-070) by gentle pipetting. In parallel, 6 μl of Lipofectamine RNAiMAX (Invitrogen, MA, USA, 13778-150) was mixed with 100 μl of OPTI-MEM by gentle pipetting, then the two were combined. Following 5 min of incubation at room temperature, the resulting 200 μl of transfection solution was added to each well of cells. For treatment with NT siRNA alone, 20 pmol of NT siRNA was used for each well of cells. For treatment with Tet3 siRNA alone, 10 pmol of NT siRNA and 10 pmol of TET3 siRNA (or Tet3 siRNA) were used for each well of cells. For TET3/PGC-1α double knockdown, 10 pmol of TET3 siRNA (or Tet3 siRNA) and 10 pmol of PGC1A siRNA (or Pgc1a siRNA) were used for each well of cells. Therefore, the total amount of siRNAs for each well of cells was 20 pmol. After 12 h of incubation at 37°C in a 5% humidified CO2 tissue culture incubator, 300 μl of medium was added and incubation was continued for an additional 24 or 48 h until further analyses.
+ Open protocol
+ Expand
4

OGR1 Silencing in Vascular Smooth Muscle Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small interfering RNA (siRNA) targeting OGR1 (OGR1-siRNA, L-005591-00-0005) and non-targeting siRNA (NT-siRNA, D-001810-10-05) as a control were purchased from Thermo Fisher Scientific. OGR1-siRNA and NT-siRNA were transfected into cells at a final concentration of 3 nM using RNAiMAX reagent (Thermo Fisher Scientific) according to the manufacturer’s instructions. BSMCs suspended in the complete culture medium without gentamicin and amphotericin B were mixed with siRNA and the RNAiMAX reagent and then cultured in 6- or 12-well plates for 46 hours before further experiments.
+ Open protocol
+ Expand
5

Investigating MNGC Formation via siRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
HaCaT (5 × 104 cells/well) and HBEC3-KT (2.5 × 104 cells/well) cells were seeded into a 96-well plate and transfected with 25 nM or 30 nM Stealth RNAi siRNAs (Thermo Fisher Scientific) using Lipofectamine RNAiMax (Thermo Fisher Scientific). By 7 to 8 h posttransfection, cells were primed with human IFN-γ for 16 h and then infected as described above. Phase-contrast images of siRNA knockdown cells were acquired at 20 to 24 h p.i. to assess MNGC formation. The siRNA-mediated knockdown effectiveness was tested by Western blot analysis. The siRNAs used are as follows: the siRNA negative control, indicated as nontargeting (NT) siRNA (catalog number 12935300; Thermo Fisher Scientific); siRNA targeting CASP4 (siCASP4) (catalog number HSS141457; Thermo Fisher Scientific); siGSDMD (catalog number HSS149278; Thermo Fisher Scientific); and siGBP1 (catalog number HSS104021; Thermo Fisher Scientific).
+ Open protocol
+ Expand
6

Knockdown Assays for KSHV and EBV Reactivation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For siRNA knockdown assays, PLK1 siRNA (Cat. # s449) or non-targeting control (NT) siRNA (Cat. # AM4636) was purchased from Thermo Fisher Scientific. TREx BCBL1-Rta and BCBL1 cells were transiently reverse-transfected with siPLK1 (50nM) or siNT (50nM), and SLK cells with siPLK (10nM) or siNT (10nM) using RNAiMAX reagents [62 (link)] according to the manufacturer’s instruction. Cells were kept in culture for 72 hrs. These cells were treated with Dox (2μg/ml) to induce KSHV reactivation. For shRNA assays, endogenous PLK1 was knocked down in Akata-BX1 cells by using its shRNA expressed from the pINDUCER10 Dox-inducible lentiviral vector, according to the reported protocol [63 (link),15 (link)]. Briefly, pINDUCER10 expressing shRNAs (S1 Table) was transiently transfected in Akata-BX1 cells using TurboFect transfection reagent (Thermo fisher scientific) according to the manufactures protocol. Cells were kept in culture for 72 hrs. These cells were treated with Dox to induce shRNA expression and human IgG (2 μg/ml) to induce EBV reactivation for 48 hrs.
+ Open protocol
+ Expand
7

Nucleofection of Human CD34+ Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human CD34+ cells were transfected by using the 4D-Nucleofector System (LONZA) as previously reported43 (link). Briefly, starting from the day after CD34+ cell purification, each sample was electroporated three times, once every 24 hours, with a small interfering RNA (siRNA) targeting human OXR1 mRNA (LIFE TECHNOLOGIES, siRNA ID s115). To exclude non-specific effects caused by interfering RNA (RNAi) nucleofection, a sample transfected with a nontargeting siRNA (NTsiRNA; LIFE TECHNOLOGIES) was included. Cells were analyzed 48 h after the last nucleofection for both cell viability and OXR1 mRNA expression.
+ Open protocol
+ Expand
8

Silencing CALR in Human CD34+ Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human CD34 + cells were transfected by using the 4D-NucleofectorÔ System (Lonza) as previously reported [15] . Briefly, starting from the day after CD34 + cell purification, each sample was electroporated thrice, once every 24 h, with a small interfering RNA (siRNA) targeting human CALR mRNAs (Life Technologies, siRNA ID s115). For each electroporation, 4 • 10 5 CD34 + cells were resuspended in 100 mL of P3 Primary Cell Solution (Lonza), containing 3 mg of siRNA, and pulsed with the program DS112. To exclude nonspecific effects caused by interfering RNA (RNAi) nucleofection, a sample transfected with a nontargeting siRNA (NTsiRNA; Life Technologies) was included. Cells were analyzed 48 h after the last nucleofection for both cell viability and CALR mRNA and protein expression.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!