The largest database of trusted experimental protocols

Peakfit version 4

Manufactured by IBM
Sourced in United States

PeakFit Version 4.12 is a software application designed for data analysis and curve fitting. It provides tools for identifying and characterizing peaks in various types of data, such as spectroscopic, chromatographic, and other analytical measurements. The software allows users to fit multiple peak models to their data and extract relevant parameters, such as peak positions, widths, and intensities.

Automatically generated - may contain errors

9 protocols using peakfit version 4

1

Infrared Spectroscopic Analysis of Extrudate Secondary Structure

Check if the same lab product or an alternative is used in the 5 most similar protocols
The secondary structure content of the extrudates was analyzed by Fourier transform infrared spectroscopy (NICOLET 6700, Thermo Fisher Scientific, Waltham, MA, USA). The determination method was based on the previous research [31 (link)]. The extrudate powders were mixed with KBr at a ratio of 1:100. The operating parameters were spectral wavenumber range 400–4000 cm−1, resolution 4 cm−1 and scan 64 times. Omnic (version 8.0, Thermo Nicolet, Waltham, MA, USA) was used to analyze each spectrum (1600–1700 cm−1) and Peakfit (version 4.12, SPSS, Chicago, IL, USA) was used for gaussian fitting and second-order derivation to analyze secondary structure changes.
+ Open protocol
+ Expand
2

High Resolution NMP Repair Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast cells were treated with MMS, and genomic DNA was extracted, as described above. High resolution NMP repair was performed as described previously [46 (link)]. Briefly, the GAL1 fragment was released from the genomic DNA using DraI and BanII restriction enzymes, and the restricted DNA was cleaved at NMP sites by incubation with AAG and APE1 enzymes. The non-transcribed strand of theGAL1 gene was first annealed to biotinylated oligonucleotides, then attached to streptavid in magnetic beads (Life Technologies) and labelled using [α-32P]dATP (Perkin Elmer) and Sequenase (Affymetrix). The labelled fragments were eluted, resolved on sequencing gels, and exposed to Phosphor Imager screens (Molecular Dynamics). The band intensities were quantified using ImageQuant, version 5.2 (Molecular Dynamics), and peak deconvolution software [Peak-Fit version 4.12 (SPSS Inc.)] as described previously [46 (link)].
+ Open protocol
+ Expand
3

Protein Secondary Structure Determination

Check if the same lab product or an alternative is used in the 5 most similar protocols
Infrared spectra were measured by a Bruker Vertex 70 FTIR spectrometer (Bruker Optics, Ettlingen, Baden-Württemberg, Germany) from 400 to 4000 cm−1 with a resolution of 4 cm−1 in 64 scans. The secondary structure content of protein was calculated via the software “Peakfit Version 4.12” (SPSS Inc., Chicago, IL, USA) and “Gaussian peak fitting” (SPSS Inc., Chicago, IL, USA) algorithm [17 (link)].
+ Open protocol
+ Expand
4

FTIR Analysis of CSPI Freeze-Thaw Cycles

Check if the same lab product or an alternative is used in the 5 most similar protocols
An FTIR spectrometer (Bruker Tensor 27, Bruker Optics, Ettlingen, Germany) was employed to determine the spectra of CSPI undergoing various F–T cycles. After mixing with KBr (1:100), CSPI was compressed as a thin tablet to scan at wavelengths of 4000–400 cm−1. Peakfit Version 4.12 (SPSS Inc., Chicago, IL, USA) software was adopted to analyze the FTIR spectrum data and the protein secondary structure.
+ Open protocol
+ Expand
5

Raman Spectroscopic Analysis of OVA Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Raman spectra were recorded on a Thermo DXR Raman microscope using the 532 nm laser excitation and constant laser power of 8 mW, grating with 900 lines/mm, and a spectrograph aperture of 50 μm pinhole. All samples were recorded under the same experimental conditions. The 30 wt% OVA solution (5 µL), and corresponding hydrogel (~10 mg) were placed on golden plates (Gold EZ spot micro, Thermo Fisher Scientific, Waltham, MA, USA), while the solid sample (~5 mg) was measured on a glass microscope slide. After acquisition, fluorescence background was subtracted from the Raman spectra using fifth order polynomial fit (OMNIC for Dispersive Raman 9.2.41 software). The selected spectral region was deconvoluted by applying the PeakFit™ version 4.12 software (SPSS Inc).
+ Open protocol
+ Expand
6

Fourier-Transform Infrared Spectroscopy of Milk Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Fourier-transform infrared (FT-IR) spectra were obtained using a Nicolet 6700 FT-IR spectrometer (Thermo Fisher Scientific Inc., Waltham, MA, USA) at room temperature. Each spectrum was recorded at the absorbance between 400 to 4000 cm−1 at a resolution of 4 cm−1 using an average of 60 scans by Nicolet Omnic 32 software (Thermo Fisher Scientific Inc., Waltham, MA, USA). The measurements were made directly for freeze-dried powder samples for milk proteins, whey protein, sodium caseinate 180, polyphenol extract, and casein-, whey protein-, and milk-based blackcurrant samples. Tests were carried out in triplicate with three measurements for each replicate. To determine the effects of polyphenols on the secondary structure of milk proteins, the spectral region between the wavenumbers of 1600 cm−1 and 1700 cm−1 was selected. The full bandwidth at half height (FWHH) was adjusted to 13 cm−1, and the resolution enhancement factor was set to 2.4. The selected spectra were smoothed with 2 points, and the second derivative calculations were used to obtain the percentage of secondary structural elements by the PeakFit Version 4.12 software (SPSS Inc., Chicago, IL, USA).
+ Open protocol
+ Expand
7

FTIR Spectroscopy of Protein Secondary Structure

Check if the same lab product or an alternative is used in the 5 most similar protocols
FTIR spectra could reflect the secondary structure of proteins [30 (link)]. The MP samples (dry form) were measured by FTIR spectra with some modifications based on the reported method by Sun et al. [31 (link)]. The samples were mixed with bromatum Kalium, and the mixture was ground and pressed into a disc. FTIR spectra were obtained in the wavenumber range from 400 to 4000 cm−1. Detection was carried out at 20 °C, and the infrared image of each sample was a superimposed image of multiple scans. The results were analyzed by EZ-Ominic software and Peak Fit Version 4.12 software (SPSS Inc., Chicago, IL, USA).
+ Open protocol
+ Expand
8

FTIR Spectroscopy of Biomaterials

Check if the same lab product or an alternative is used in the 5 most similar protocols
The determination method of FTIR was modified according to Xu et al. [28] (link). The sample was mixed with KBr (1:11), milled to 2–3 μm, and pressed into a 1–2 mm slice. The slice was measured with an FTIR spectrometer (Nicolet IS50, Thermo Electron Corporation, USA), and the spectra were recorded in the range of 400–4000 cm−1. Omnic 8.0 software (Thermo Fisher Scientific Inc., Waltham, MA) was used to analyze the FTIR spectral data. The data deconvolution, peak-separation, and fitting analysis of the amide I-band (1600–1700 cm−1) were determined by PeakFit Version 4.12 software (SPSS Inc., Chicago, IL, USA).
+ Open protocol
+ Expand
9

Comparative Analysis of Microbial Colonies

Check if the same lab product or an alternative is used in the 5 most similar protocols
All data are presented as the mean values and standard deviations, which were compared using one-way analysis of variance (ANOVA). Duncan’s multiple range test was used to show the differences among mean values using SPSS 19 (SPSS Inc., Chicago, IL, USA). Specific parameters are as follows: One-way ANOVA: Post Multiple Comparisons, Polynomial; Degree: linear; Equal variances assumed: LSD and Duncan; Significance level: 0.05; Statistics: description. The number of colonies in the plate was calculated by ImageJ software (National Institutes of Health, USA). Raman spectra were analyzed by PeakFit Version 4.12 software (SPSS Inc). Figures were obtained by Origin Pro 8.5 (OriginLab Co., Northampton, MA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!