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4 protocols using any kd criterion tgx precast gels

1

Western Blot Analysis of Protein Markers

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The protein concentration of lysates was determined using the BCA Protein Assay Kit (Thermo Scientific, Rockford, IL, USA). Western blots were carried out in Any kD Criterion TGX precast gels (BioRad Laboratories, Hercules, CA, USA) as previously described [7 (link)]. The primary antibodies used were; rabbit anti-human SOD1 (0.8 μg/ml, raised against a peptide corresponding to aa 57–72 in the human SOD1) [41 (link)], anti-LC3B rabbit (1:1000; Sigma-Aldrich, St. Louis, MO, USA), anti-GRP78 rabbit (1:5000; Novus Biologicals, Littleton, CO, USA), anti-β-actin mouse (1:100 000; Milipore, Bedford, MA, USA). The secondary antibodies were horseradish peroxidase (HRP)-conjugated polyclonal anti-mouse or anti-rabbit IgG (Dako, Glostrup, Denmark). The immunoreaction signal was visualized using an ECL Select reagent (GE Healthcare Biosciences, Piscataway, NJ, USA) recorded on a ChemiDoc apparatus (BioRad Laboratories, Hercules, CA, USA) and analysed using Quantity One software (BioRad Laboratories, Hercules, CA, USA).
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2

Immunoblotting of Superoxide Dismutase 1

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Crude homogenates were diluted 1:10 in 1 × SDS sample buffer without prior centrifugation and heated for 10 min at 100 °C before separation on Any kD Criterion TGX precast gels (Bio-Rad). Either anti-hSOD1 mAbs (1 μg/mL), mouse anti-c-MYC IgG1 (1 μg/mL) or mouse anti-β-actin (1:100,000; Merck Millipore) were used as primary antibodies and HRP-conjugated anti-mouse IgG (1:10,000, DAKO) as a secondary antibody. Immunocaptured samples were analysed using rabbit polyclonal antibodies generated against a peptide corresponding to amino acids a.a. 24–39 in the hSOD1 sequence [15 (link)] and an anti-rabbit IgG (1:10,000, DAKO) as secondary antibody. The immunoreaction signal was visualized using ECL Select reagent (GE Healthcare), recorded on a ChemiDoc Touch Imaging system and analysed using Image Lab software (Bio-Rad).
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3

Liver Protein Extraction and Immunoblot Analysis

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For protein extraction, whole liver tissue was homogenized in radioimmunoprecipitation assay buffer (Cell Signaling, Danvers, MA) together with cocktails of protease and phosphatase inhibitors (Sigma-Aldrich, St. Louis, MO). For immunoblot analysis, 30 μg of protein lysate was resolved on Any kD Criterion TGX Precast Gels (Biorad, Hercules, CA), transferred to nitrocellulose membrane, and blocked with Intercept Blocking Buffer (LI-COR, Lincoln, NE) for 1 hour before being incubated with primary antibodies overnight at 4 °C. Membranes were incubated with IRDye secondary antibody (LI-COR, Lincoln, NE), and protein bands were visualized with LI-COR Imaging System (LI-COR, Lincoln, NE). Expression intensity was quantified by Image Studio Licor (LI-COR, Lincoln, NE). Protein load was verified with anti-β-actin antibody. Anti-IL-1β (Abcam, Cambridge, UK; 1:500), anti-caspase-1 (Santa Cruz, CA; 1:500), anti-TNF-α (Cell Signaling, Danvers, MA; 1;500), anti-type 1 collagen (Birmingham, AL; 1:500), anti-α-SMA (Abcam, Cambridge, UK; 1:500), and anti-β-actin (Millipore/Sigma, Burlington, MA; 1:6000) were used.
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4

Western Blot Protocol for Protein Quantification

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Total protein concentration was normalized according to BCA assay prior to western blot unless stated otherwise. Thereafter, samples were denatured by heating to 95 °C for 5 min in Laemmli sample buffer containing 10% β-mercaptoethanol, and run on AnykD™ Criterion™ TGX™ precast gels (Bio-Rad Laboratories) with tris-glycine-based running buffer. Proteins were transferred from polyacrylamide gels onto polyvinylidene difluoride (PVDF) membranes using a semi-dry transfer system (Trans-Blot® Turbo™ System, Bio-Rad). Non-specific binding sites were blocked with 5% (w/v) skimmed milk in Tris-buffered saline with 0.05% (v/v) Tween20 (TBST) for 1 h and the membrane was incubated at 4 °C overnight under gentle shaking with the primary antibody in TBST with 5% (w/v) BSA (Cell Signaling Technology). The membrane was washed and incubated with the respective HRP-conjugated secondary antibody (Vector Labs) in TBST for 2 h at room temperature. The protein bands were detected by using Clarity™ Western ECL Substrate Kit (Bio-Rad Laboratories) or ECL Prime™ (GE Healthcare), and LI-COR Odyssey® Fc Imaging system (LI-COR Biosciences). Band intensities were quantified using Image Studio™ software (LI-COR Biosciences). For proteins of interest, band intensities were normalized to the housekeeping protein GAPDH. All antibodies used for western blot are listed in Supplementary Table 2.
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