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5 protocols using axio m1 microscope

1

Immunohistochemical Analysis of Mouse Skin

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Standard histology and immunostaining protocols (including H&E and Trichome) were performed. Briefly, immunohistochemical analysis was performed on 5- to 10-μm-thick sections of mouse skin. The following primary antibodies were used: mouse monoclonal anti-Ki-67 (1:100; Novocastra), rabbit polyclonal anti-GFP (1:200; Abcam), rabbit polyclonal anti-Sdf1 (1:100; Abcam), mouse monoclonal anti-α smooth muscle actin (1:100; Abcam), rabbit polyclonal anti-CD31 (1:100; Abcam), rat anti-mouse CD45 (1:100; BioLegend), and rabbit polyclonal anti-Cxcr4 (1:100; Abcam). Immune complexes were detected with secondary antibodies conjugated with either Cy3, Cy5, fluorescein isothiocyanate (Jackson ImmunoResearch), or horseradish peroxidase (Vector Laboratories). In situ hybridization on Cxcl12 was performed per the manufacturer's instructions (Advanced Cell Diagnostics); a positive control probe was directed against RNA polymerase, and a negative control probe was directed against bacterial DapB. After staining, images were directly analyzed on an AxioM1 microscope equipped with a CCD digital camera (Carl Zeiss). The number of Ki-67+ cells was counted for every 250 μm of cartilage, measured at the distal tip, for each sample. A minimum of four different samples was used for each time point and then averaged.
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2

Melanoma Cells Transplantation in Chicken Embryos

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Melanoma cells were treated with PXDN, NTN4 or GLIS3-specific siRNAs or scrambled control siRNA as described above and labelled with CM-DiO or Dil as per manufacturer's instructions (Invitrogen, USA). Cells were grown overnight in a hanging-drop fashion to allow the formation of aggregates. Fertile chicken eggs were incubated at 38°C for 48 hours prior to transplantation. Cell aggregates consisting of similar sized small aggregates from approximately 500–800 cells were harvested and carefully injected with a glass pipette into the trunk neural tube lumen of developing chicken embryos. The eggs were then sealed with adhesive tape and re-incubated for 2 days. After incubation, embryos were removed from the eggs and fixed with 4% paraformaldehyde and whole mounts were analyzed for the localization of melanoma cells using Lumar V12 Zeiss microscope as described previously [20 (link)]. Segments of embryos containing the melanoma cells were then washed in PBS, incubated overnight in 30% sucrose at 4°C, frozen and 20μm transverse sections cut using a cryostat. Sections were rinsed in PBS, mounted in fluorescent mounting media and imaged using a Zeiss Axio M1 microscope and AxioVision software.
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Mammary Gland β-Galactosidase Expression

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To examine the expression of Mex3c in the mammary gland through detecting β-galactosidase (β-gal) activity, the fourth mammary glands of wildtype or heterozygous Mex3c gene trap mice were dissected and stained with X-Gal as described [22 (link)]. Some mammary glands stained with X-Gal were then stained with Carmine alum to visualize the mammary gland epithelium. Stained tissues were then embedded in paraffin and sectioned to observe under the microscope. Images were taken with an Axio M1 microscope equipped with an AxioCam MRc digital camera (Carl Zeiss).
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Immunofluorescence Staining Protocol

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Cells were cultured on cover slides, fixed in 4% paraformaldehyde for 20 min on ice, and permeabilized with 0.1% Triton-X100 for 3 min at room temperature. Non-specific adhesion sites were blocked in Protein Block solution (X0909, Dako) for 30 min at room temperature. Visualization of protein signals in cells was performed by incubation with primary antibodies for 1 hr and followed by 45 min incubation with related secondary antibodies and stained with DAPI for 5 min at room temperature (Table II). Mouse or goat isotype IgG was used as the negative control for the primary antibody. Slides were examined using a Zeiss Axio M1 microscope. The intensity of the fluorescence and exposure time was the same for all cell lines. Each experiment was performed in duplicate.
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5

Immunofluorescence Analysis of Kidney Tissues

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Kidney tissues were fixed in 4% paraformaldehyde/PBS at 4°C overnight. Some tissues were embedded in OCT for cryosections, and some were dehydrated and embedded in paraffin. Paraffin-mounted sections of 5–8 μm were prepared for histologic and immunofluorescence analyses. For immunofluorescence staining, deparaffinized and rehydrated sections were incubated with primary antibodies (1:200 for ClC-5 and megalin antibodies, 1:1,000 for GFP antibody) following blocking, and were then incubated with CF-594-conjugated secondary antibody (Biotium, Fremont, CA). Sections were mounted in mounting medium with DAPI (Vector Laboratories, Burlingame, CA). Images were acquired with an Axio M1 microscope equipped with an AxioCam MRc digital camera (Carl Zeiss, Thornwood, NY). Different images were assembled into one file with Adobe Photoshop, with subsequent resizing, rotation, and cropping. Fluorescence intensity was analyzed by NIH ImageJ software (v.1.49).
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