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86 protocols using rock inhibitor y 27632

1

Generation of Human iPSCs from Hair Keratinocytes and Fibroblasts

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Human iPSCs were generated from plucked human hair keratinocytes and from human foreskin fibroblasts (System Biosciences). Keratinocytes were cultured and infected as described in32 (link). Fibroblasts were cultured in DMEM, 10% FBS, 1% antibiotic-antimycotic, 1% NEAA, and 1% GlutaMAX. For reprogramming 1*105 fibroblasts were plated on coated 6-well plates and were infected with 5*108 viral copies of STEM CCA39 OKSM lentivirus on two subsequent days in culture medium supplemented with 10 µM Rock inhibitor/Y-27632 (Selleckchem), 8 µg/ml polybrene (Sigma Aldrich). On the third day infected keratinocytes and fibroblasts were distributed equally into 6-well plates on mitomycin-inactivated rat embryonic fibroblast (REF) feeder cells. 1,5*104 REFs were mitotically inactivated with 7,5 µg/ml mitomycin C for 2,5 h. During reprogramming cells were cultured in KO-DMEM, 20% KOSR, 1% antibiotic-antimycotic, 100 μM NEAA, 1% GlutaMAX, 50 mM β-mercaptoethanol, 50 μg/ml L-Ascorbic acid (Carl Roth), 10ng/ml FGF2 (Cell Guidance Systems), 10 µM Rock inhibitor/Y-27632 (Selleckchem) at 5% CO2, 5% O2, and 37 °C, and medium was changed every second day. IPSC colonies were mechanically transferred onto Matrigel coated (Corning) 6-well plates after three weeks.
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2

Establishment and Culture of Human Colorectal Cancer Organoids

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P6T and P26T human colorectal cancer organoids were established in a previous study (Van De Wetering et al, 2015 (link)) and obtained a following material transfer agreement with Hubrecht Organoid Technology. Organoids were cultured in advanced DMEM/F12 medium (Thermo Fisher Scientific), supplemented with penicillin–streptomycin (Sigma-Aldrich), 10 mM HEPES (Thermo Fisher Scientific), 1X GlutaMAX (Thermo Fisher Scientific), B27 (Thermo Fisher Scientific), 10 mM nicotinamide (Sigma-Aldrich), 1.25 mM N-acetylcysteine (Sigma-Aldrich), 10% vol/vol Noggin-conditioned medium, 50 ng/ml human EGF (Peprotech), 500 nM A83-01 TGF-ß type 1 receptor inhibitor (Tocris), and 10 μM SB202190 P38 MAPK inhibitor (Sigma-Aldrich). Organoids were maintained in Cultrex BME (R&D systems) and dissociated using TrypLE (Thermo Fisher Scientific) during passaging. Medium was supplemented with 10 μM Y-27632 ROCK inhibitor (Selleck Chemicals) after splitting.
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3

Directed neural induction of human iPSCs

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Neural induction of human iPSCs was performed using the dual SMAD inhibition paradigm6 (link),21 (link). Engineered CRISPRi-iPSCs62 (link) were grown in Essential 8 (Thermo Fisher Scientific) media on Matrigel (Corning) to 80% confluency. Cells were rinsed with DPBS and dissociated with Accutase (StemPro). After centrifugation at 300 × g for 3 minutes and resuspension in Essential 8 media with 10 μM Y-27632 ROCK inhibitor (Selleckchem), cells were replated at a density of 250,000 cells/cm2 overnight at 37° C. The next day (D0), cells were rinsed with DPBS and changed to neural induction media, which consisted of Essential 6 media (Thermo Fisher Scientific) with freshly-added SMAD inhibitors 500 nM LDN193189 (Selleckchem) and 10 μM SB431542 (Selleckchem). Media was replaced every 2 days until the endpoint of interest, as described21 (link).
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4

Reprogramming of RPTEC cells

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RPTEC cultures were incubated for one hour with 10 μM Y-27632 ROCK-inhibitor (Selleckchem) prior to DPBS-/- wash and subsequent trypsinization. Plasmid concentrations of 0.88 μg per 1 million cells were utilized. Transfection was achieved through electroporation via the Neon® Transfection System (Life Technologies) as per the manufacturer’s instructions, and settings were programmed to one, 30 ms pulse at 1,100 V. Transfected cells were seeded on cell-culture-treated, Matrigel®-coated (Corning Life Sciences) plates filled with Fibroblast medium [27 ] and incubated with 10 μM ROCK-inhibitor for the first twenty-four hours. Medium was changed every odd day beginning with D1 post-transfection. When cells reached 70% confluence, the medium was switched to TeSRTM-E7TM reprogramming medium (Stemcell Technologies) until first colonies appeared; cutting and passage of colonies occurred in accordance with manufacturer’s instructions using mTeSRTM1 medium (Stemcell Technologies), typically every 5–7 days.
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5

Culturing Human Skin, HEK293, and iPSCs

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Cell cultures were maintained at 37°C, 5% CO2. Human skin fibroblasts were cultured in DMEM (ThermoFisher, #11965092) supplemented with 10% fetal bovine serum and passaged by trypsinization (0.25% trypsin EDTA, ThermoFisher, #25200056). HEK293 cells were cultured in DMEM high glucose (Life Technologies, #11965084), supplemented with 10% fetal bovine serum (Sigma). Human iPSCs were maintained on Matrigel (hESC-Qualified matrix, Corning, #354277) with mTeSR1 medium (Stem Cell Technologies, #05850). Media was changed every 24 hours and iPSC lines were passaged with Accutase (Millipore, # SCR005) with 5 min incubation at 37°C. For replating iPSCs, mTeSR1 medium was supplemented with the Y27632 ROCK inhibitor (10 µM, Selleckchem, #S1049).
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6

Directed Differentiation of ESCs into EBs

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ESCs at ~80% confluence were dissociated into single cells with StemPro Accutase (Life Technologies). A total of 1.5 × 106 cells were resuspended in Brew medium containing 10 µM Y27632 ROCK inhibitor (Selleckchem, S1049), and cultured on ultra-low attachment plates (TPP, 93060). Cells were maintained in these conditions for 3 days. After 7 days, floating EBs were plated on laminin-coated dishes (Biolamina, Sundbyberg, Sweden, LN521-03) and cultured in DMEM-F12 medium (Gibco, Waltham, MA, USA, 21331-020) containing 20% Knockout Serum Replacement (KSR; Gibco, 10828-028), 1% Glutamax I-CTS (Gibco, A12860-01), 1% MEM-NEAA (Gibco, 1140-035), 0,1 mM 2-mercaptoethanol (Gibco, 21985-023), and 1% Pen/Strep (Gibco, 15140-122) for 28 days.
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7

Reprogramming JPCs to iPSCs via VEE-OKSM-GFP RNA

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JPCs were reprogrammed to iPSCs as previously published [13 (link)]. Briefly, JPCs were incubated in hPL5 medium containing 0.2 µg/mL recombinant B18R protein (eBioscience, San Diego, CA, USA) prior to transfection with a self-replicating VEE-OKSM-GFP RNA. From day 1–5 transfected cells were incubated with hPL5 + 25% B18R conditioned medium (BcM) + 1 µg/mL puromycin (Invivogen, Toulouse, France) to select transfected cells. Total of 250 µM histone deacetylase inhibitor sodium butyrate (NaB, Selleck Chemicals LLC, Houston, TX, USA) was added to the medium to enhance reprogramming efficiency. At day 7, the medium was changed to E8 medium (Essential 8, Thermo Fisher Scientific Inc., Waltham, USA) + 25% BcM. Single iPSC colonies were picked and transferred into VTN-coated wells containing E8 medium + 10 µM Y27632 ROCK inhibitor (Selleck Chemicals LLC, Houston, TX, USA) and maintained in E8 medium with daily medium changes. Passaging was performed every 4–6 days.
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8

Culturing Human Trophoblast Stem Cells

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Human TSCs were obtained from Dr. Takahiro Arima and cultured as previously described (4 (link)). Briefly, the human TSCs were seeded on 5 μg/ml Collagen IV (Corning)-coated plates containing TSC culture medium [Dulbecco’s modified Eagle’s medium (DMEM)/F12 (Gibco)]. The medium was supplemented with 1% insulin-transferrin-selenium-ethanolamine (ITS-X; Gibco), 0.3% bovine serum albumin (BSA; Sigma-Aldrich), 0.2% fetal bovine serum (FBS; GeminiBio), 0.1 mM β-mercaptoethanol (Sigma-Aldrich), 0.5% penicillin–streptomycin (Gibco), 0.5 μM A83-01 (Wako Pure Chemical Corporation), 0.5 μM CHIR99021 (Selleck Chemicals), 0.5 μM SB431542 (Stemcell Technologies), 5 μM Y27632 (ROCK inhibitor, Selleck Chemicals), 0.8 mM valproic acid (VPA; Wako Pure Chemical Corporation), 50 ng/ml epidermal growth factor (EGF; PeproTech) and 1.5 μg/ml l-ascorbic acid (Sigma-Aldrich). When the cells reached 70–80% confluency, they were trypsinized with TrypLE (Gibco) for 8 min at 37°C and the detached cells were seeded on Collagen IV-coated dishes at a 1:3 split ratio. TSCs were cultured in a 37°C and 5% CO2 incubator. The medium was replaced every day with a fresh medium.
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9

Generation of human iPSCs from somatic cells

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Dermal biopsies and blood samples were collected after informed consent and approval from the committee on Research Ethics of Northern Savo Hospital district (license no. 123/2016). Fibroblasts and peripheral blood mononuclear cells T cells were isolated and cultured as previously described (Korhonen et al., 2015 (link), Qu et al., 2013 (link)). Somatic cells were reprogrammed to iPSCs with either lentiviral vectors, CytoTune -iPS 1.0, or CytoTune -iPS 2.0 Sendai Reprogramming Kits (Invitrogen) as previously described (Holmqvist et al., 2016 (link)). iPSCs were grown on Matrigel-coated (Corning) plates in Essential 8 Medium (E8; Life Technologies) and passaged with 0.5 mM EDTA in the presence of 5 μM Y-27632 ROCK inhibitor (Selleckchem). Isogenic control lines were generated according to a previously published protocol (Chen et al., 2015 (link)). Further details are provided in Supplemental Experimental Procedures.
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10

Neural Induction of iPSCs using CRISPR

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Neural induction of human iPSCs was performed using the dual SMAD inhibition paradigm.6 (link),21 (link) Engineered CRISPRi-iPSCs62 (link) were grown in Essential 8 (Thermo Fisher Scientific) media on Matrigel (Corning) to 80% confluency. Cells were rinsed with DPBS and dissociated with Accutase (StemPro). After centrifugation at 300 x g for 3 min and resuspension in Essential 8 media with 10 μM Y-27632 ROCK inhibitor (Selleckchem), cells were replated at a density of 250,000 cells/cm2 overnight at 37°C. The next day (D0), cells were rinsed with DPBS and changed to neural induction media, which consisted of Essential 6 media (Thermo Fisher Scientific) with freshly-added SMAD inhibitors 500 nM LDN193189 (Selleckchem) and 10 μM SB431542 (Selleckchem). Media was replaced every 2 days until the endpoint of interest, as described.21 (link)
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