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48 protocols using specord 50 plus

1

Antioxidant Effects on Enzyme Activity

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The antioxidant effect of PD on the inhibition of enzymes activity levels was determined using the pericarps of 15 fruit samples. Crude enzyme extract was obtained according to the method used by Khan et al. [7 (link)] and Duan et al. [22 (link)]. The reaction mixture used to assess the PPO activity was prepared by following the protocol used by Khan et al. [7 (link)] and Jiang [23 (link)]. Absorbance was recorded at 410 nm for 5 min with a UV–visible spectrophotometer (SPECORD 50 Plus, Analytik Jena, Germany). One unit of enzyme activity was defined as the activity that caused a change of 0.001 in the absorbance per min. The reaction mixture for POD activity was prepared following the protocol used by Khan et al. [7 (link)] and Zhang et al. [24 (link)] and absorbance was measured using a UV–visible spectrophotometer (SPECORD 50 Plus, Analytik Jena, Germany). One unit of enzyme activity was defined as the amount that caused a change of 0.01 in the absorbance per min. Protein contents were determined according to the method used in [25 (link)]. Enzyme (PPO and POD) activity levels were expressed as units min−1 mg−1 protein. The experiments were performed in triplicate.
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2

Spectrophotometric Determination of PPO

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The measurement of PPO was carried out using AACC method 22–85.01 (16 (link)) with some modifications. Sample mass was adjusted to 10 mg and the quantity of the l-DOPA (Sigma-Aldrich, Merck, Steinheim, Germany) sample solution was adjusted to 0.5 mL and diluted with distilled water to a final volume of 1 mL. Afterwards, the samples were mixed on vortex (IKA® MS 3 basic shaker; IKA® Works Inc.) for 55 min at 1000 rpm and centrifuged (MicroCL 21; Thermo Fisher Scientific GmbH, Dreieich, Germany) for 5 min at 6164×g prior to spectrophotometric measurement (Specord 50 Plus; Analytik Jena, Jena, Germany) at 475 nm. According to the applied method (16 (link)), activity of PPO is expressed as the absorbance.
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3

Enterococcus faecalis Culture Protocol

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E. faecalis (ATCC 29212) was grown overnight at 37°C in Brain Heart Infusion broth (BHI; Sigma–Aldrich, St. Louis, MO, USA) on an orbital shaker. After reaching the stationary phase of growth, cultures were harvested by centrifugation (2500 rpm for 5 min; Megafuge 1.0, Heraeus Sepatech, Osterode, Germany), washed with phosphate-buffered saline (PBS; Sigma–Aldrich, St. Louis, MO, USA) and resuspended in PBS yielding an optical density (OD) of 0.06 measured at 600 nm by means of a photospectrometer (SPECORD® 50 PLUS, Analytik Jena, Jena, Germany). These suspensions were used for PIB experiments.
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4

Spectroscopic Quantification of Bacterial Pigments

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BChl a and carotenoids were extracted and measured as described in Glaeser and Klug, 2005 [27 (link)]. Briefly, 1 mL samples of Rhodobacter cultures were harvested at 17,000× g for 5 min. Pellets were resuspended in 50 µL ddH2O and mixed with 500 µL of acetone/methanol (7/2, v/v) by vortexing for 30 s. Samples were centrifuged at 17,000× g for 5 min, and the absorption of the supernatant was measured in a Specord 50 Plus spectrometer (Analytik Jena, Jena, Germany), using acetone/methanol (7/2, v/v) as a reference. The carotenoid and BChl a concentrations were calculated from the absorptions at 484 and 770 nm, respectively, with extinction coefficients of 128 mM−1·cm−1 for carotenoids [44 (link)] and 76 mM−1·cm−1 for BChl a [45 ]. Concentrations were normalized to the OD660.
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5

Spectroscopic Characterization of COCP

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UV‐Visible absorption of COCP was characterized with a UV spectrophotometer (SPECORD® 50 PLUS, Analytik Jena). As much as 1.0 mg/ml of polysaccharide solution was prepared with ultrapure water and then employed to conduct the UV‐visible spectroscopy observation in the wavelength range of 200–800 nm, by using ultrapure water as the background.
Fourier transform infrared (FT‐IR) spectroscopy of COCP was monitored with a FT‐IR spectrophotometer (Nicolet iS50, Thermo Scientific). The dried polysaccharide sample was ground with potassium bromide (KBr) and then pressed into slices, and then it was subjected to FT‐IR spectrum analysis in the wavenumber range of 4000–400 cm‐1 using 32 scans with a resolution of 4 cm‐1.
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6

Color Analysis of Photosensitive Compound

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The coloration of the PTS was documented by photography, determined with a spectrophotometer (Specord 50 Plus; Analytik Jena AG, Jena, Germany) and analyzed with WinASPECT PLUS software (Analytik Jena AG, Jena, Germany).
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7

APGD-MS for Compound Characterization

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APGD-MS experiments were performed with a homemade ion source of APGD (Figure 6) coupled with a triple quadrupole mass spectrometer (Agilent Technologies, Santa Clara, CA, USA). The APGD ion source consisted of a quartz tube, titanium tube anode, and tungsten cathode. The APGD-MS experiments were carried out with the gas flow rate in the range of 100–600 mL/min, discharge voltage in the range of 765–1005 V, interelectrode gap distance in the range of 2–8 mm, and distance between the anode orifice and the MS inlet ranging from 3–15 mm. The basic parameters of MS were performed with m/z in the range of 10–500 and collision energy range in the range of 1–20 eV. The collision gas was nitrogen. The catalytic ability of PPO measured the absorbance at 475 nm by a UV–Vis spectrophotometer (SPECORD 50 PLUS, Analytik Jena, GA, Jena, Germany). The ESI-Q-TOF-MS (Agilent Technologies, Santa Clara, CA, USA) was determined to perform the experiments.
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8

Astaxanthin Production from Haematococcus pluvialis

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Parts of the H. pluvialis colonies were transferred from an agar plate into a 250 mL Erlenmeyer flask, and 150 mL culture medium was added. The culture was cultivated on a shaking plate at 175 rpm for 16 days at 24 °C until an optical density of 0.6 at 750 nm (OD750) was reached. Light was continuously supplied by one cool fluorescent lamp with a light intensity (photon flux density) of 50 μmoL m−2 s−1. The broth was subsequently transferred into a 2000 mL Erlenmeyer flask, which was filled up with fresh culture medium (working volume 1600 mL) and incubated under the same conditions for 14 days. This broth was used as an inoculum to cultivate 8 litres with an initial OD750 of 0.1 in a self-designed open pond. Water loss by evaporation was compensated for once every 24 h by adding distilled water. The open pond was illuminated continuously using two cool fluorescent lamps with a light intensity (photon flux density) of 100 μmoL m−2 s−1 at 24 °C for 14 days. The photon flux intensity was then increased to 300 μmoL m−2 s−1 for 10 days to enrich the cyst cells with astaxanthin. The OD750 was measured with a SPECORD 50 Plus spectrophotometer from Analytik Jena (Germany).
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9

Kinetic Analysis of Beta-Lactamase

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Steady-state kinetic constants (Km and kcat) were determined by measuring substrate hydrolysis under initial rate conditions and using the Hanes–Woolf linearization of the Michaelis–Menten equation (50 ). Kinetic experiments were performed by following the hydrolysis of each substrate at 30°C in 50 mM HEPES buffer pH 7.5, 50 mM Na2CO3. The reactions were performed in a total volume of 500 μL at 30°C. BSA (20 μg/mL) was added to diluted solutions of beta-lactamase in order to prevent enzyme denaturation. The data were collected with a Specord 50 PLUS spectrophotometer (Analytik Jena). Each kinetic value is the mean of three different measurements.
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10

Multimodal Biophysical Characterization

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Scanning
electron microscopy (SEM) images
were captured using a FEI NOVA NanoSEM 230 at 5 kV. Transmission electron
microscopy (TEM) images were captured using a JEOL JEM-2100 microscope.
The ζ-potential and hydrodynamic radius were measured using
a Malvern Zetasizer Nano ZS system. Protein quantification, enzymatic
activity assays, and OD600 determination were carried out
using a Synergy HTX Absorbance microplate reader and a Synergy H1M
Fluorescence microplate reader. A spectrophotometer Specord 50/plus
(Analytik Jena, Germany) was employed to monitor the U-MSNP and M-MSNP
activity for 14 days. Optical videos were recorded using an inverted
optical microscope (Leica DMi8) equipped with a 63× water objective.
Fluorescence images of live/dead assay were acquired using an inverted
optical microscope (Leica DMI3000B), coupled with a 10×, 20×,
40×, and 63× objectives, along with a Leica digital camera
DFC3000G with LAS V4.5 software. The videos were analyzed using Python-based
code. Growth curves of planktonic E. coli were performed using a SPARK Multimode microplate reader (Tecan).
Continuous biofilms were imaged using a Zeiss LSM 800 confocal laser
scanning microscope (CLSM) with a 20×/0.8 air objective. FIJI
and COMSTAT2 software were used for biofilm biomass quantification.
Origin 2018, Microsoft Excel Professional, and ImageJ were employed
for the analysis of the experimental data.
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