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41 protocols using anti ng2

1

Immunohistochemical Profiling of CNS Markers

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For immunohistochemical, immunocytochemical, and Western blot procedures please reference the Supplemental Experimental Procedures. Antibodies used for immunohistochemistry were anti-GFP (Abcam, 1:500), anti-Brdu (Accurate,1:200, 30 min 2N HCl followed by 15 min 0.1M Boric Acid brain section pre-treatment), anti-NG2 (Millipore, 1:500), anti-GFAP (Sigma, 1:500), anti-ET-1 (Abbiotec, 1:200), anti-CD31 (BD Biosciences, 1:500), anti-Jagged-1 (Iowa Hybridoma Bank, 1:200), anti-IBA1 (Wako, 1:500), anti-MAG (Santa Cruz, 1:200), anti-MBP (Covance (SMI-99p), 1:1000), anti-Hes1 (Millipore, 1:1000), anti-CD11b/MAC1 (ABD Serotec, 1:400), anti-Olig2 (Millipore, 1:500), and anti-APC (Ab-7) (CC-1) (Calbiochem, 1:500). Antibodies used for immunocytochemistry were anti-GFP (Abcam, 1:500), anti-O1 (R&D systems, 1:500), anti-GFAP (Sigma, 1:500), and anti-NG2 (Millipore, 1:500). Antibodies used for Western Blot analysis include anti-MBP (Covance (SMI-99p), 1:5000), anti-MAG (Santa Cruz (sc-15324), 1:200), anti-CNPase (Covance, 1:500), anti-Jagged1 (Santa Cruz (sc-135955), 1:200), anti-β-actin(C4) (Millipore, 1:5000), anti-GFAP (Sigma, 1:5000), and anti-NICD (Iowa Hybridoma Bank C17.9C6, 1:1000).
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2

Immunohistochemical Analysis of Neuroinflammation

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Brain slides were blocked with 1% BSA/PBS for 1 h at RT and incubated with anti-MBP (1:500, Abcam, Burlingame, CA, USA), anti-Iba-1 (1:300, BD Bioscience, USA), anti-NF-κB/p65 (1:200, Cell Signaling Technology, Danvers, MA, USA), anti-TLR4 (1:200, Bioworld Tech. Inc., St. Louis Park, MN, USA), anti-iNOS (1:300, Abcam, Burlingame, CA, USA), anti-Arg-1 (1:300, Gene Tex, Irvine, CA, USA), anti-GFAP (1:250, Thermo Fisher, USA), anti-BDNF (1:200, Novusbio, Centennial, CO, USA), anti-GDNF (1:500, Abcam, Burlingame, CA, USA), anti-NG2 (1:300, Millipore, Germany) and anti-Ki67 (1:200, BD Pharmingen, USA) at 4°C for overnight, followed by corresponding secondary antibodies at RT for 1 h. The results were repeated three times with consecutive brain slices from each group, and the slides were observed under fluorescence microscopy in a blinded fashion. Analysis and quantification were done in three sections/per mouse by Image-Pro Plus 6.0 software.
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3

Immunocytochemical Analysis of Oligodendrocyte Lineage

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Following EF-directed OPC migration, or OPC differentiation, the cells were fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.1% TritonX-100 for 10 min, and incubated in blocking solution (5% BSA in PBS) for 30 min prior to incubation with primary antibodies at 4 °C overnight. After extensive washing with PBS, cells were incubated with fluorescence-labelled secondary antibodies at 37 °C for 1 h, washed with PBS, and mounted in Vectashield mounting medium with DAPI (Vector Laboratories, Peterborough, UK). All antibodies were diluted in blocking solution. The primary antibodies used were: anti-Olig2 (1:500, Millipore, cat. no. AB9610, Billerica, MA, USA), anti-A2B5, clone A2B5-105 (1:200, Millipore, cat. no. MAB 312R), anti-NG2 (1:200 Millipore, cat. no. AB5320), anti-MBP (1:400 Millipore, cat. no. 05-675) and anti-F-actin antibody (1:300, Abcam, cat. no. AB205). The secondary antibodies used were: Alexa Fluor® 594 donkey anti-goat IgG and Alexa Fluor® 488 donkey anti-mouse IgG (Molecular probe, Invitrogen, Carlsbad, CA, USA). Nuclei were counterstained with diamidino-2-phenylindole (DAPI). Images were captured using a DeltaVision microscope imaging system (GE Healthcare, Chicago, IL, USA).
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4

Immunofluorescence Staining of Aortic Rings

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The rat and mouse aortic rings were respectively cultured for 1 and 2 weeks before the staining. The rings were washed with PBS, fixed in 4% formaldehyde for 20 minutes. The wells were then washed once in PBS and the rings were permeabilized with 0.5% Triton X-100 in PBS for 30 minutes, before being washed twice in PBS. 100μl of BS-1 Lectin FITC (1 mg/ml; Sigma, cat. no. L9381/L5264) (1:200), anti-actin, α-SMA Cy3 (Sigma, cat. no. C6198) (1:500) or anti-NG2 (Millipore, ab5320) (1:200) was added and incubated overnight at 4°C. For IL-6Rα staining on aortic rings, 100μl of the unconjugated (1:200) IL-6Rα antibody was left overnight at 4°C. The following day the rings were washed with PBS and incubated with goat anti-rabbit Alexa 488 antibody (Life Technologies, A-11034) for 2 hours at room temperature. The plates were washed twice in PBS and the rings were removed from the 96 well plate, using a syringe needle, placed on a microscope slide and mounted with Prolong Gold DAPI containing medium (Invitrogen, cat. no. P36931). The slides were left to dry and imaged using confocal microscopy (Zeiss LSM 510 META).
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5

Western Blotting of Zebrafish Spinal Cord

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Zebrafish spinal cord was collected 7 and 10 days after injury along with the control, uninjured cords. Tissues were prepared in extraction buffer (37.5 mM Tris, 75 mM Nacl, 0.5% Triton X-100, protease inhibitor cocktail) and then the resulting tissue lysates were subjected to either 7.5% or 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). After the electrophoresis, proteins were transferred onto nitrocellulose membranes and subjected to western blotting. The western blots were developed with antibody anti-CNPase (1:1000, Millipore, USA), anti- MAG (1:100, Santa Cruz Biotechnology, USA), anti- OCT4 (1:200, Millipore, USA) and anti-NG2 (1:500, Millipore, USA) followed by anti-mouse or anti-rabbit alkaline phosphatase coupled secondary antibody (1:1,000 Jackson laboratory, USA). GAPDH was used as internal loading control protein. Protein bands were visualized using NBT/BCIP as substrate. PageRuler Broad Range Protein Ladder (Thermo Scientific, USA) was used as a standard molecular weight marker.
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6

Quantifying Oligodendrocyte Precursor Proliferation

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Twenty-four hour pulses of 10µM bromo-deoxyuridine (BrdU) (BD Pharmingen) were applied at 24, 48 and 72h post siRNA transfection (Figure 5A). After each BrdU pulse, cells were fixed and immunostained in order to determine the number of positive cells. Cells were fixed in 4% paraformaldehyde in PBS. After treatment with 6N HCl and 1% Triton X-100 to denature nuclear DNA, the cells were incubated in 0.1M sodium borate (in PBS and 1% Triton X-100) for 10min. Immunocytochemistry was done using anti-BrdU antibody (1:1000; BD Pharmingen) and anti-NG2 (1:400; Millipore) with the corresponding fluorescent secondary antibodies. The percentage of BrdU positive cells was estimated on the basis of the total number of NG2 positive cells.
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7

Immunofluorescent Staining of Retinal Cells

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Three representative slides from each of the six eyes were used for immunofluorescent staining. Eighteen sections were rinsed with phosphate-buffered saline (PBS) and blocked using DAKO serum-free protein block (X0909; Dako, Carpinteria, CA, USA). The samples were either incubated with primary antibodies at 4℃ overnight, followed by incubation with secondary antibodies for two hours at room temperature the next day, or they were incubated overnight at 4℃ with conjugated antibodies. The following antibodies were used for paraffin sections: Alexa Fluor 488 isolectin GS-IB4 conjugate (1 : 500 dilution; Life Technologies, Carlsbad, CA, USA), Anti-NG2 (1 : 500 dilution; Millipore, Bedford, MA, USA), anti-human CD235 (N-cadherin) (1 : 500 dilution; Biolegend, San Diego, CA, USA), Alexa Fluor 594 goat anti-rabbit IgG (1 : 200 dilution, Life Technologies) and Alexa Fluor 647 donkey anti-mouse IgG (1 : 200 dilution, Life Technologies). Nuclei were counterstained with DAPI (4′,6-diamidino-20 phenylindole). The sections were analyzed with a fluorescence microscope (Eclipse 90i; Nikon, Tokyo, Japan).
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8

Construction and Characterization of a Multicellular BBB Organoid

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Human pericytes, primary astrocytes, and hCMEC/D3 released by 0.025% trypsin/EDTA (Sigma Aldrich, Saint Louis, MO) were resuspended in BBB-working medium (Vasculife-Mv supplemented with 2% normal human serum with antibiotics omitted), and 1.5 ×103 of each cell type (final volume of 100 μL/well) were seeded onto sterile 1% w/v solid agarose (Sigma) pre-dispensed into low binding 96-well plates (Thermo Fisher Scientific). A further 100 μL of BBB working media (BBBM) was added to bring the volume in each well to a total of 200 μL. Multicellular BBB organoids were allowed to self-assemble (48–72 h) in a humidified 5% CO2-incubator at 37°C.22 (link),30 (link) The orientation of the component cells was determined by pre-staining astrocytes with 1μM CellTrace Far Red (Thermo Fisher Scientific) for 20minat 37°C in the dark prior to assembling organoids. Staining for CD31 on endothelial cells and NG2 on pericytes was performed post-formation. Once organoids formed, they were washed, pooled, and fixed with 3.7% formaldehyde for 10 min prior to staining for 45 min with anti-CD31 (1:200, R&D Systems) and anti-NG2 (1:200, Millipore) post-permeabilization with 0.1% Triton X-100. The receptors were visualized with anti-mouse-IgG Alexa Fluor 450 (CD31) and anti-rabbit-IgG Alexa Flour 488 (NG2). Images were captured with Zeiss LSM 780 and line plot analysis conducted in Fiji.
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9

Immunofluorescence Labeling of Tissue Sections

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Tissue sections from all groups were fixed in 4% PFA at room temperature for one hour. They were then washed with PBS, mounted on glass and incubated in a solution of 10% normal goat serum in PBS (MP Biomedical, UK) and 0.25% Triton X-100 (Sigma, Germany) for one hour. Next, the tissues were incubated with 100 µL of a primary antibody (anti-MBP, MBL, anti-NG2 and anti-OX-42; Millipore, Germany) at room temperature for 90 min or in the dark at 4 °C overnight. They were washed three times with PBS and stained with secondary antibodies (Alexa Fluor® 633 and 488, Invitrogen, Germany) that were diluted in PBS (1:100). Of note, a few tissue sections were processed without primary antibodies in order to examine the specificity of immunolabelling with the antibodies, and this resulted in no immunostaining.
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10

Quantitative Analysis of Pericyte Coverage

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Explant tissues were cultured, washed, and stained using standard protocols as mentioned above. For the pericyte coverage analysis, the endothelium in the metatarsal assay was stained with an anti-CD31 (BD Pharmingen, 553370) antibody and in the aortic ring assay with Isolectin B4 (Vector Labs, FL-1201). Pericytes were stained with anti-αSMA (Sigma, C6198) and anti-NG2 (Millipore, AB5320) antibodies. Single images were taken using a 20 × objective focussed on the plane of vessels using a Nikon epifluorescent microscope. For quantitative analysis, using NIS Elements Software, single thresholds were calculated for each individual channel (endothelium, pericytes) and the intersection of the endothelium covered by pericytes. The analysis was blinded to treatments and was performed on masked images with different thresholds used per image as required to avoid saturation. Pericyte coverage was then calculated as % (Intersection/Endothelium), and the values were normalised to the average of the internal control (vehicle/PBS) for every experiment. The normalised values of at least three independent experiments were pooled for statistical analysis. Outliers were eliminated using the average ± 2SD mean.
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