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12 protocols using vegf c

1

Autophagy Regulation in Renal Tubular Cells

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The rat proximal tubular epithelial cell line, NRK52E, was purchased from Cell Repository, Chinese Academy of Sciences (Shanghai, China). Cells were cultured in Dulbecco's high glucose modified Eagle's medium (HyClone, USA) supplemented with 10% FBS (Gibco, USA), 1% penicillin, and 1% streptomycin. For serum deprivation, when 70% to 80% confluent, NRK52E cells were washed with phosphate buffered saline (PBS) twice and then cultured in serum (10% FBS) or serum‐free medium for indicated periods. Pretreatment of VEGF‐C (Biovision, USA) was carried out 4 hours before serum deprivation, and then NRK52E cells were incubated with VEGF‐C at different concentrations in a serum‐free medium for another 24 hours. For autophagic flux analysis, NRK52E cells transfected with scrambled siRNA or VEGF‐C siRNA were pretreated with 10nmol/L bafilomycin A1 (Sigma‐Aldrich, USA) for 1 hour and then cultured in a serum‐free medium for 24 hours.
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2

VEGF-C Expression Analysis by Western Blot

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Whole cell lysates were harvested and samples (30μg protein/lane) were fractionated by SDS–PAGE and transferred to nitrocellulose membranes. Immunoblotting was carried out using antibodies to VEGF-C (Abcam, Cambridge, UK, Cat#ab191274) at dilution 1:100, and β-actin (Sigma-Aldrich Corp, cat. #A2228; lot. #052M4816V) at dilution 1:5000. Bands were visualized using ECL chemiluminescence (Amersham). All experiments were done in triplicate.
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3

VEGFR-2 Immunoprecipitation and Western Blot Analysis

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Cells were lysed in RIPA buffer (50 mM Tris-HCl (pH 7.4), 1% Nonidet P-40, 0.25% sodium deoxycholote, 150 mM NaCl, 1 mM EDTA, 1 mM NaF, and proteinase inhibitor cocktail). A total of 200 μg of cell lysate and 10 μl rabbit monoclonal anti-VEGFR-2 antibody (no.2749, Cell Signaling Technology; 1:100 dilution) were incubated in a shaker at 4 °C overnight. After 2 h of incubation with 25 μl of protein A/G ultraLink Resin (Thermo Scientific) at 4 °C, the beads were washed three times with PBS then boiled in SDS-PAGE sample buffer for 5 min to elute proteins for subsequent Western blotting for VEGF R2. For Western blotting, the proteins from placental tissue or first trimester HTR8 trophoblast cell lysates were separated on 12% SDS–polyacrylamide gels and blotted onto PVDF membranes and probed with anti-mouse antibodies for VEGF A, VEGF C, Dll4 (Abcam), Hey 2 and β-actin (Biovision). We used ECL chemiluminescence (Amersham Biosciences) to visualize the bands and recorded them using Konica SRX 101 A developer.
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4

Comprehensive Antibody Panel for Signaling

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The antibodies used in this study were as follows: EGFR (1:50; # ab52894), HER3 (1:25; # ab5470), HER4 (1:150; # ab19391), VEGFR3 (1:100; # ab27278), VEGF-C (1:50; # ab135506), Wnt5a (1:100; # ab72583), Beta-Catenin (1:100; # ab32572), p-Akt1 (1:100; # ab32505), Akt1 (1:50; #ab59380) were purchased from Abcam company, UK. HER2 (1:100, #4290) was purchased from Cell Signaling Technology, Inc., USA. EphrinA1 (1:100; # sc-911) and EphA3 (1:100; # sc-920) were purchased from Santa Cruz Biotechnology, USA. Horseradish peroxidase (HRP)-conjugated secondary antibodies (Dako EnVision, USA).
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5

Protein extraction and western blot

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To extract total protein, sodium dodecyl sulfate (SDS) lysis buffer (1% SDS, 60 mM Tris-HCl) with protease inhibitor (Roche, Basel, Switzerland) and phosphatase inhibitor (GenDEPOT, Katy, TX, USA) was used. WB was performed as previously reported [28 (link)]. The primary antibodies used were as follows: hexokinase 2 (HK2, ab209847, EPR20839, 1:500), glucose transporter 1(GLUT1, ab652, 1:2000), L-type amino acid transporter 1 (LAT1, ab208776, EPR17573, 1:1000), vascular endothelial growth factor B (VEGFB, ab110649, EPR4555, 1:1000), VEGFC (ab135506, 1:2000), CD133 (ab19898, 1:1000) and Snail/Slug (ab180714, 1:1000) from Abcam (Cambridge, UK), signal transducer and activator of transcription 3 (STAT3, #9139, 1:1000), pSTAT3 (#9145, D3A7, 1:2000) from Cell Signaling Technology (Danvers, MA, USA), and β-actin-HRP (sc-47778, C4, 1:5000) from Santa Cruz Biotechnology (Dalla, TX, USA). For the digital visualization of the chemiluminescent WB, the ChemiDoc XRS (Bio-Rad, Hercules, CA, USA) was used. These experiments were replicated at least three times with similar results. ImageJ (National Institutes of Health, Bethesda, MD, USA) and BioRad Image Lab 6 (Bio-Rad) were used for band quantification.
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6

Evaluating Afatinib's Molecular Mechanisms

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3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) (5 mg/mL; Sigma, St. Louis, MO, USA), dimethyl sulfoxide (DMSO; Sigma). Afatinib (BIBW2992) was purchased from Selleck Chemicals (Houston, TX). All these compounds were dissolved in DMSO at 10 mmol/L as stock solutions and stored at -20°C. Antibodies against GAPDH were from Epitomics (Burlingame, CA). Antibodies against CCR7 (Y59), VEGFR3, VEGFR2, VEGFC, and LYVE-1 were from Abcam (Cambridge, MA, USA). Antibodies against phospho-EGFR (Y1068), EGFR, Akt, phospho-Akt (S473), JAK1/2, phospho-JAK1 (Tyr1022/1023), phospho-JAK2 (Tyr1007/1008), c-Myc, STAT3, phospho-STAT3 (Tyr705), FAK, and phospho-FAK (Tyr925) were purchased from Cell Signaling Technology (Beverly, MA).
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7

VEGFC and VEGFR3 Protein Detection

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Protein was extracted from the hearts using the AllPrep DNA/RNA/Protein Mini Kit (QIAGEN, Duesseldorf, Germany) according to the manufacturer’s instructions. Protein extracts (40 µg) were separated by 10–12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE). The blots were probed with primary antibodies against VEGFC or VEGFR3 (Abcam, Cambridge, UK). HRP-conjugated anti-rabbit or anti-rat IgG (Southern Biotech, Birmingham, AL) were used as the secondary antibodies.
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8

Comprehensive Immunoassay and Cell Culture Protocol

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Anti-mouse and anti-rabbit IgG-conjugated horseradish peroxidase, rabbit polyclonal antibody specific for β-actin was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). CCL5 and VEGF-C antibodies were purchased from Abcam (Cambridge, MA, USA). Recombinant human VEGF-C was purchased from R&D Systems (Minneapolis, MN, USA). Recombinant human CCL5 and the VEGF-C ELISA kit were purchased from PerpoTech (Rocky Hill, NJ, USA). The miR-507 mimic, miR-507 inhibitor, Lipofectamine 2000 and Trizol were purchased from Life Technologies (Carlsbad, CA, USA). The human miRNome microRNA Profilers QuantiMir™ kit was purchased from SBI (Mountain View, CA, USA). Dulbecco's modified Eagle's medium (DMEM), α-minimum essential medium (MEM), fetal bovine serum (FBS) and all other cell culture reagents were purchased from Gibco-BRL Life technologies (Grand Island, NY, USA). The dual-luciferase reporter assay kit was purchased from Promega (Madison, WI, USA). All other chemicals were purchased from Sigma-Aldrich (St Louis, MO, USA).
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9

Protein Expression Analysis via Western Blot

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Briefly, the protein concentration was determined using the Bradford protein assay kit (Bio-Rad). Then the protein samples were separated by sodium dodecy1 sulphate–polyacrylamide gel electrophoresis, followed by electrophoretically transferred onto a nitrocellulose membrane. The membrane was incubated with primary antibody in TBST at 4℃ overnight. Next, the membrane was washed three times and incubated with the appropriate secondary antibody. The protein bands were visualized using enhanced ECL-associated fluorography. The following antibodies were from Abcam: VEGFC (1:1000 dilution for WB) and ACTB/β-actin (1:100,000 dilution for WB).
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10

Western Blot Analysis of Colon Cancer Markers

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Treated and untreated colon cancer cells were centrifuged at 13,000 × g for 10 min at 4°C and the supernatant (20–30 μg of protein) was run on 10% SDS-PAGE gel and transferred electrophoretically to a polyvinylidene fluoride membrane (Millipore, Shanghai, China). The blots were blocked with 5% skim milk, followed by incubation with antibodies against ICAM-1, VCAM-1, VEGFC, CXCR4, TGFBR1, E-cadherin, MMP-2 and MMP-9 were purchased from Abcam (Cambridge, MA, USA); antibodies against SDC2, CDH2 and CCL18 were purchased from Santa Cruz Biotechnology (Dallas, TX, USA); antibody against GAPDH was purchased from Cell Signaling Technology (Danvers, MA, USA). Blots were then incubated with goat anti-mouse or anti-rabbit secondary antibody (Beyotime, Shanghai, China) and visualized using enhanced chemiluminescence (Thermo Scientific).
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