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17 protocols using bs 6313r

1

Immunohistochemical Analysis of Lipid Peroxidation

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The samples of liver tissue were fixed with 4% paraformaldehyde for 24 h, then embedded in paraffin. Sections (5 µm thick) were stained with hematoxylin-eosin (H&E) to observe lipid accumulation in the liver.
Formalin-fixed, paraffin-embedded liver tissue sections were used for the immunohistochemical staining. After being deparaffinized and hydrated, the slides were washed in Tris-buffered saline (TBS, 10 mmol/L Tris; 0.85% NaCl, pH 7.5) containing 10% bovine serum albumin. Endogenous peroxidase activity was quenched by incubating the slides in methanol and 0.6% H2O2/methanol. For antigen retrieval, the sections were pretreated with trypsin for 15 min at 37 °C. Blocking was performed with normal rabbit serum. After overnight incubation with an anti-4-hydroxynonenal (4-HNE) antibody (Bioss, Inc., USA catalog #bs-6313-R) (1:50 dilution) at 4 °C, the slides were washed in TBS buffer, and HRP conjugated secondary antibody (Bioss, Inc. catalog #bs-0295M)) was added and incubated in the room temperature for 45 min. The immunostaining was visualized using diaminobenzidine tetrahydrochloride, and the slides were counterstained with hematoxylin. Measurement of 4-HNE was made by counting the mean number of stained cells under 400-fold magnification using a light microscope. For all sections, 25 random fields were examined per section, and 3 animals were used per group.
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2

Immunohistochemical Analysis of Liver Inflammation

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Immunohistochemistry staining were performed according previous studies [14 (link),28 (link)]. Livers were paraffin-embedded and cut into 5 μM-thick sections. After that, these sections were dewaxed and rehydrated, followed by heat-induced epitope retrieval. Subsequently, sections were placed into hydrogen peroxide solution in order to suppress endogenous peroxidase activity. Then the sections were washed with PBS for three times and blocked by BSA solution. Immunohistochemical staining was conducted by incubating primary antibodies for 24 h overnight at 4 °C and then secondary antibodies for 1 h at room temperature. The primary antibodies used for EC toxicity animal experiments were shown as follows: Anti-TNFα (Abways, CY5992, 1:200), Anti-IL-1β (Servicebio, GB11113, 1:200), Anti-NLRP3 (Abways, CY5651, 1:200), Anti-4-HNE (Bioss, bs-10802R, 1:300). The primary antibodies used for Fer-1 and tBHQ rescue experiments were shown as follows: TNFa (Proteintech, 26405-1-AP, 1:200), NLRP3 (Proteintech, 19771-1-AP, 1:200), IL-1β (Servicebio, GB11113, 1:800), 4-HNE (Bioss, bs-6313R, 1:200). Sections were stained with freshly prepared DAB and hematoxylin, then dehydrated and sealed with neutral gum. Images were detected using a Nikon microscope.
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3

Immunohistochemical Analysis of Lung Markers

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The mice lung sections were evaluated for immunohistochemical localization of Cav‐1 (CST; #3267, 1:800), collagen I (Abcam; ab34710, 1:400), CD68 (Boster; BA3638, 1:200), myeloperoxidase (MPO) (Servicebio; G1311224, 1:400) and 4‐hydroxynonenal (4‐HNE) (Bioss; bs‐6313R, 1:200). The human lung sections were evaluated for immunohistochemical localization of Cav‐1 (CST; #3267, 1:800). The positive staining area was calculated from five random and noncoincident fields in each section at ×200 using the Image‐Pro‐Plus software to quantify expression of caveolin‐1, collagen I and 4‐HNE. Neutrophil (MPO) and macrophage (CD68+ cell) quantification were determined in 10 random and noncoincident fields in each section at ×100.
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4

Immunohistochemistry of Paraffin-Embedded Tissues

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The tumor tissue sections embedded in paraffin after fixing with 10% formalin were cut in 4 µm-thick slices. The paraffin sections were baked at 60 °C for 2 h, followed by deparaffinization. Deparaffinized sections were incubated with 10 mM citrate buffer for antigen retrieval. After endogenous peroxidase had been blocked with 3% hydrogen peroxide at RT for 10 min, the tumor sections were incubated with the following primary antibodies against 4-HNE (bs6313R, Bioss, China), Ki67 (27309-1-AP, Proteintech, USA), CHAC1 (15207-1-AP, Proteintech), or SLC7A11 (DF12509, Affinity, USA) at 4 °C overnight. Next, goat anti-rabbit IgG/HRP as the secondary antibody (PV6001, GoldenBridge, China) was incubated at RT for 20 min. Then, 3,3-diaminobenzidine (DAB) staining was employed and subsequent hematoxylin counterstaining, followed by sealing with neutral gum. The sections were dried at 37 °C overnight and the images were captured under a fluorescent microscope (Olympus).
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5

Mouse Maxillary Molar Histological Analysis

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The mouse maxillae were dissected, fixed in 4% paraformaldehyde for 48 h, and decalcified in 0.05 M EDTA for 4 weeks. After dehydration, the specimens were embedded in paraffin and sectioned at 5 μm along the sagittal plane of the upper first molar. For morphological analysis, sections were stained using an H&E staining kit (Servicebio, Wuhan, China). Osteoclasts were visualized by TRAP staining (387A, Sigma–Aldrich, USA) according to the manufacturer’s instructions. For immunohistochemistry, antigen retrieval was performed with 20 μg.mL−1 proteinase K (Sigma‒Aldrich) at 37 °C for 1 h after deparaffinization and rehydration. The sections were incubated with an anti-4-HNE adduct antibody (bs-6313R, 1:200, Bioss) overnight at 4 °C. HRP-linked secondary antibody (ab205718, 1:10000, Abcam) and a DAB detection kit (GeneTech, Shanghai, China) were used the next day according to the manufacturers’ instructions. Images were captured with a slide scanner (Leica Aperio AT2, Nussloch, Germany).
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6

3D Soft Agar Colony Formation

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MG63 and LM7 cells were seeded into 0.4% low-melting-point agarose (Lonza, Basel, Switzerland; 50101) on top of a 1% agarose layer (1000 cells per well, 24-well plate). For approximately 14 days, cells were maintained in an incubator at 37°C and 5% CO2 with vehicle or 1,25(OH)2D. The Live-or-Dye™ Zombie Aqua fixable viability staining kit was used for live cell analysis (32004-T; Biotium). For quantification, colonies were fixed in 4% PFA and counted using a dissecting scope (Zeiss Stemi 508, Carl Zeiss, Jena, Germany) and ImageJ software. Images were converted to 8-bit, background subtracted using rolling ball radius of 1000 pixels and light background, and then applied threshold using Internodes correction. The spheroids were enumerated using the particle analyzer with the settings: size = 0.01/0.001-10mm2; circularity = 0-1.0. All experiments were designed with three replicates per condition. An ordinary one-way ANOVA with Sidak’s multiple comparisons test was conducted. A number of spheroids were extracted from soft agar and immunostained. Unconjugated rabbit polyclonal antibodies were used to detect 4-hydroxynonenal, type 1 and type 3 collagens (bs-6313R, bs-10423R, and bs-0948R; Bioss). Because of their small sizes, LM7 colonies were not extracted.
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7

Immunohistochemical Analysis of Glypican-3, PCNA, and 4-HNE

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3-5 μm thick sections were cut using an automated microtome (Leica Biosystems) and mounted on a silane coated slide. After deparaffinization, slides were immersed in xylene and rehydrated in different graded ethanol followed by 3% H2O2 in methanol for 15 min to quench the endogenous peroxidase activity. Then the sections were rinsed with PBS, and antigen retrieval was performed using citrate buffer (PH = 6.0) in the decloaking system at 110°C for 10 min. After blocking, the sections were incubated with primary antibody overnight at 4°C. Primary antibodies used were rabbit polyclonal anti-glypican-3 (1:100, A13988; Abclonal, Woburn, MA, United States), rabbit polyclonal anti-PCNA (1:100, A0264; Abclonal, Woburn, MA, United States), and rabbit polyclonal anti-4-Hydroxynonenal (4HNE) (1:100, bs-6313R; Bioss, Woburn, Massachusetts, United States). After washing with PBS, sections were incubated with universal anti-mouse/rabbit Ig (MP-7500; Vector lab, Burlingame, CA, United States) for 30 min at room temperature and immunostaining was performed with ImmPACT DAB kit (SK4105; Vector lab, Burlingame, CA, United States) and counterstained with hematoxylin. After mounting with Histamount solution, sectioned were examined under EVOS FLc imaging system (Life Techonologies, United States).
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8

Comprehensive Antibody Panel for Oxidative Stress Analysis

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The following primary antibodies were used for immunoblot analysis and immunohistochemistry: mouse monoclonal anti–transferrin receptor antibody (13‐6800, Invitrogen), goat polyclonal anti–Lipocalin‐2/NGAL antibody (AF1857, R&D systems), rabbit monoclonal anti–β‐actin (ACTB) antibody (AC026, ABclonal), rabbit monoclonal anti–IRP1 antibody (ab126595, Abcam), rabbit polyclonal anti–IRP2 antibody (NB100‐1798, Novus), rabbit polyclonal anti–FTH1 antibody (3998, CST), rabbit polyclonal anti–ferritin light chain (FTL) antibody (ab69090, Abcam), rabbit polyclonal anti–divalent metal transporter 1 (DMT1) antibody (20507‐1‐AP, proteintech), rabbit polyclonal anti–8‐hydroxy‐2'‐deoxyguanosine (8‐OHdG) antibody (bs1278R, Bioss), rabbit polyclonal anti–4‐Hydroxynonenal antibody (bs6313R, Bioss), anti–CD10 antibody (ab256494, Abcam), anti–Ki67 antibody (ab16667, Abcam), rabbit monoclonal anti–Cleaved Caspase‐3 antibody (9664, CST), rabbit monoclonal anti–Glutathione Peroxidase 4 antibody (ab125066, Abcam), and anti–xCT antibody (NB300‐318, Novus). Secondary antibodies used in immunoblot analysis and immunohistochemistry were as follows: HRP‐conjugated polyclonal Goat anti–Rabbit antibody (P0448, DAKO), HRP‐conjugated polyclonal Rabbit anti–mouse antibody (P0260, DAKO) and HRP‐conjugated polyclonal Rabbit anti–Goat antibody (P0160, DAKO).
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9

Immunohistochemical Analysis of ER-alpha and 4-HNE

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After embedding in paraffin, sections of the otic bullae Sects. (4 µm) were prepared. They were subsequently deparaffinized and rehydrated. Antigen retrieval was performed in citraconic acid buffer (Immunosaver®, #097–06,192, Fujifilm Wako Pure Chemical Corporation) for 45 min in an autoclave at 95℃. Endogenous peroxidase activity was inhibited with 3% hydrogen peroxide for 15 min, and sections were blocked with an R.T.U. Animal Free Blocker and Diluent® (SP-5035, Vector Laboratories, Burlingame, CA, USA). After rinsing with phosphate buffer saline (PBS), the sections were incubated with rabbit polyclonal antibodies against ERα (1:200, #106,132-T08, Sino Biological) and 4-HNE (1:400, #bs-6313R, Bioss) overnight at 4℃. After subsequent rinsing with PBS once again, they were incubated with a secondary antibody (Histofine Simple Stain Mouse MAX-PO(R) #414,341, Nichirei Biosciences, Tokyo, Japan) for 1 h at room temperature and stained with the DAB chromogen for 10 min. After a final rinsing, counterstaining was performed using Mayer’s hematoxylin.
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10

Kidney Tissue Protein Expression Analysis

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We used western blotting technique to determine the level of lipid peroxidation, apoptosis, ferroptosis and mitochondrial fission and fusion in the kidney samples. In brief, the kidneys were homogenized in liquid nitrogen and were lysed in RIPA buffer (Bio Basic, Amherst, NY, USA) supplemented with protease inhibitor (Roche, Basel, Switzerland) for 10 min at 4°C. The degree of expression of apoptosis-related proteins including Bcl-2, Bax, cleaved caspase 3 (c-caspase 3) and PARP, oxidative stress 4-HNE and ferroptosis-related proteins like GPX4 were assayed in the homogenized kidney tissues. These antibodies raised against 4-HNE (bs-6313R, 1:200; Bioss, Mass, USA), Bax (bs-0032R, 1:100; Bioss, Mass, USA), Bcl-2 (1:500; Transduction, Bluegrass-Lexington, KY, USA), c-caspase 9 (1:1000, Chemicon International, Temecula, CA, USA), c-caspase 3 (1:1000, Chemicon International, Temecula, CA, USA), poly(ADP-ribose) polymerase (PARP, #9532, 1:1000; Cell Signaling Technology, Mass, USA), GPX4 (1:500, Abcam, UK), dynamin-related protein 1 (Drp-1, 1:1000) (Cell Signaling Technology, Beverly, MA, USA), and optic atrophy 1 (OPA-1, 1:2000) (BD Biosciences, San Jose, CA, USA) and β-actin (1:1000; Sigma, St. Louis, MO, USA) were adapted in the present study.
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