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20 protocols using tecnai biotwin

1

Nanowire Characterization Using Electron Microscopy

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The morphology, length and diameter of the NWs were investigated by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) (SEM: Quanta 3D; FEI Company, Hillsboro, OR, USA; and TEM: TecnaiBioTWIN; FEI Company). Energy-dispersive X-Ray spectroscopy (EDX) was used for determining the chemical composition of NWs (scanning TEM (STEM) Tecnai BioTWIN; FEI Company). Images were analyzed using ImageJ software as previously described25 (link). For TEM imaging, fresh samples were prepared in which NWs were released from the alumina template and rinsed several times with ethanol with sonication periods of 10 seconds between the washing steps. For SEM imaging sonication steps were skipped to prevent fragmentation of the NWs. Likewise, the NWs were quantified by first quantifying the amount of pores in determined area from SEM images of the alumina template and then extrapolated to the total deposition area. The amount of nanowires was obtained by taking the assumption that every pore contains a NW as previously performed25 (link). The deposition area was determined using ImageJ software from where the number of NWs was obtained for further Fe mass calculation.
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2

Liposome Characterization by TEM

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3 μl of liposome solution (~10 mM lipid) was added to a carbon coated EM grid (carbon thickness ~5 nm) and removed after incubation at room temperature for 5 minutes. 50 μl 0.5% uranyl acetate was dropped onto the grid, in order to stain and wash the grid. Excess uranyl acetate solution was removed and the grid was dried prior to imaging. Images were acquired using a Tecnai BioTwin transmission electron microscope (FEI, Cambridge, UK).
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3

Needle Complex and PrgI Polymerization

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Purified needle complex and in vitro polymerized PrgI samples were deposited onto glow-discharged carbon-coated copper grids (300 mesh) and negatively stained with 2% phosphotungstic acid, approximately pH 7.0 (Electron Microscopy Sciences, Hatfield, Pennsylvania). Images were collected using an Olympus 6 megapixel CCD camera (Munster, Germany) run by the Morada Soft Imaging system in-line with a Tecnai Biotwin transmission electron microscope operating at 80 kV (FEI Company, Hillsboro, Oregon).
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4

Negative Staining of Pseudoviruses

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Freshly glow-discharged 200 mesh Formvar/carbon-coated copper grids (Electron Microscopy Services, CG200-Cu) were inverted on drops of gradient-purified PsV diluted 1:9 in phosphate-buffered saline (PBS), and virus allowed to adsorb for five minutes. The grids were washed twice in deionized water and stained by two one-minute incubations on drops of Nano-W (Nanoprobes, Nephank, NY) before removing excess stain by gentle blotting with Whatman #1 filter paper. The grids were air-dried before viewing on a FEI Tecnai Biotwin transmission electron microscope at 80Kv. Images were taken using a Morada CCD camera and iTEM (Olympus) software, and ImageJ was used to provide sizing information based on a scale bar embedded in the images.
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5

Transmission Electron Microscopy of PEG-HCuSNPs

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BALB/c mice were i.v. injected with PEG-HCuSNPs or PEG-HCuSNPs@Au (both 20 mg/kg of Cu). At predetermined time points, the mice were euthanized and the livers were quickly collected, cut into 1 mm3, and fixed in the fixation reagent (2.5% glutaraldehyde plus 2% paraformaldehyde in 0.1 M of phosphate buffer, pH 7.4). The TEM sample preparation followed a routine procedure. The samples were embedded in Epon resin followed by ultrathin sectioning (60–70 nm thickness). The sections were placed on nickel grids with Formvar/carbon film stained with 7% uranyl acetate and lead citrate. The samples were examined under a TEM microscope (FEI, Tecnai Biotwin, LaB6, 80 kV). For TEM/EDS analysis, the sections were directly deposited on molybdenum, nickel, or gold grids without postsection staining. The grids were placed on a beryllium holder and analyzed with TEM (FEI, Tecnai G2 20 TWIN) and EDS (Oxford, EDX 6767).
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6

TEM Imaging of Aortic Collagen Fibrils

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We applied our approach to three thoracic aorta specimens excised from adult (8–14 weeks of age) male mice having a C57BL/6 genetic background to demonstrate and validate our TEM image segmentation and analysis pipeline in the specific context of vascular applications. To test our methodology against substantially different collagen fibril architectures, we show results for one wild-type control ascending thoracic aorta (ATA), one descending thoracic aorta (DTA) with disrupted TGF-β signaling (denoted as Tgfbr1r2; see Kawamura et al. [13 (link)] for details), and one Fbn1C1041G/+ ATA representative of Marfan syndrome (denoted as MFS; see Weiss et al. [23 (link)] for details). Specimen excision and preparation as well as image acquisition methods have been described previously [13 (link), 23 (link)]. Briefly, segments were fixed in 2.5% glutaraldehyde/2% paraformaldehyde in sodium cacodylate buffer at room temperature for 2 h at 4°C. Samples were rinsed in sodium cadodylate buffer before post-fixation in 1% osmium tetraoxide for 1 h and subsequent staining using 2% uranyl acetate for 1 h. Afterward, samples were washed and embedded in resin and sections of the adventitial layer were imaged using a FEI Tecnai BioTwin transmission electron microscope.
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7

Iron Nanoparticles Surface Functionalization

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Fe NWs were coated with APTES and BSA through the formation of covalent bonds between the coating agent and the iron oxide (Fe2O3) interphase that surrounds the NWs formed after releasing the NWs from the alumina. The morphology of BSA and APTES coated NWs was analyzed by TEM (TecnaiBioTWIN; FEI Company).
NWs were also coated with thiol-polyethylene glycol (PEG-SH) (50 μmol PEG/g Fe). In this case, the NWs had to be first coated with APTES and further activated with 2-Iminothiolane (2-IT) and aldrithiol as previously described53 , to finally react with thiol-PEG (2 kD).
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8

Immunogold Labeling for Transmission Electron Microscopy

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Fixed specimens at an optimal concentration were placed onto a 400 mesh
carbon/formvar coated grids and allowed to absorb to the formvar for a minimum
of 1 minute. For immunogold staining the grids were placed into a blocking
buffer for a block/permeabilization step for 1 hr. Without rinsing, the grids
were immediately placed into the primary antibody at the appropriate dilution
overnight at 4°C (1:300 anti-CD9 ab92726, Abcam and anti-GPC1
PIPA528055, Thermo Scientific). As controls, some of the grids were not exposed
to the primary antibody. The following day, all the grids were rinsed with PBS
then floated on drops of the appropriate secondary antibody attached with 10 nm
gold particles (AURION, Hatfield, PA) for 2 hrs at room temperature. Grids were
rinsed with PBS and were placed in 2.5% Glutaraldehyde in 0.1M Phosphate
buffer for 15 min. After rinsing in PBS and distilled water the grids were
allowed to dry and stained for contrast using uranyl acetate. The samples were
viewed with a Tecnai Bio Twin transmission electron microscope (FEI, Hillsboro,
OR) and images were taken with an AMT CCD Camera (Advanced Microscopy
Techniques, Danvers, MA).
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9

TEM Analysis of Nanotube-Modified Dental Adhesive

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TEM analysis was carried out on resin composite/HNT-modified experimental adhesive samples in order to confirm the presence of the nanotubes (HNTs) within the adhesive resin. Resin composite/SBMP specimens were also prepared for comparison purposes. Disk-shaped specimens (7 × 2 mm) were fabricated using a custom-made silicone mold (Exaflex Putty, GC America Inc., Alsip, IL, USA). Next, resin composite (RC, Durafill VS shade A2, Heraeus Kulzer GmbH, Dirmagen, Germany) was placed into the mold and cured for 40 s, followed by application of the nanotube-modified adhesive (DOX-free) and light-curing for 20 s. Likewise, the control specimens were prepared using the SBMP adhesive resin. The specimens were cut to produce approximately 2 × 2 × 2 mm2 beams using a diamond disk before TEM preparation [25 (link)]. Ultra-thin sections (70–90 nm) were taken from the resin blocks containing the RC/adhesive samples using a diamond knife (Diatome, Electron Microscopy Sciences, Hatfield, PA, USA), placed on copper mesh grids and then imaged at 80 kV (TEM, Tecnai BioTWIN, FEI, Hillsboro, OR, USA).
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10

Electron Microscopy Sample Preparation

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The Center for Cellular and Molecular Imaging Electron Microscopy Facility at the Yale School of Medicine prepared the samples. Cells were fixed in 2.5% (vol/vol) glutaraldehyde in 0.1 M sodium cacodylate buffer plus 2% (wt/vol) sucrose, pH 7.4, for 30 min at RT and 30 min at 4 °C. After rinsing, cells were scraped in 1% (wt/vol) gelatin and centrifuged in a 2% (wt/vol) agar solution. Chilled cell blocks were processed with osmium and thiocarbohydrazide-osmium liganding. Samples were incubated overnight at 60 °C for polymerization. The blocks were then cut into 60-nm sections using a Leica UltraCut UC7 and stained with 2% (wt/vol) uranyl acetate and lead citrate on Formvar/carbon-coated grids. Samples were imaged using a FEI Tecnai BioTwin at 80 kV, equipped with a Morada CCD and iTEM (Olympus) software for image acquisition.
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