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5 bromo 2 deoxy uridine labeling and detection kit 1

Manufactured by Roche
Sourced in United States, Switzerland

The 5-Bromo-2′-deoxy-uridine Labeling and Detection Kit is a laboratory tool used to label and detect DNA synthesis in cells. It provides reagents and protocols for the incorporation of 5-bromo-2'-deoxyuridine (BrdU) into newly synthesized DNA, which can then be detected using specific antibodies.

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16 protocols using 5 bromo 2 deoxy uridine labeling and detection kit 1

1

DNA Synthesis Assessment by BrdU Labeling

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DNA synthesis was assessed using the 5‐bromo‐2′‐deoxyuridine Labeling and Detection Kit I (Roche Applied Science, Vienna, Austria) according to the manufacturer's instructions for adherent cells. After the staining procedure, coverslips were analyzed by fluorescence microscopy, as described 6. Cells of three visual fields were counted and the number of BrdU‐positive cells was expressed as percentage of total cell number.
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2

Colony Formation and Proliferation Assays

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For colony formation assay, Gal-3-transfected and untrasfected LAN-5 and LAN-1 cells were exposed to 400 μg/ml G418, and colonies were counted after 21 days. Individual groups of 15 or more cells were counted as ‘colonies'. For cell proliferation assay, either cell number was measured by trypan blue exclusion test or cell proliferation was assayed by the 5-Bromo-2′-deoxy-uridine Labeling and Detection Kit I (Roche Diagnostics, Indianapolis, IN, USA), as recommended by the manufacturer. At least 200 cells/sample were counted in triplicate experiments.
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3

BrdU Labeling of Differentiating Cells

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BrdU labeling was performed on cells induced to differentiate on coverslips with DMI or insulin alone, using a 5-Bromo-2′-deoxy-uridine Labeling and Detection Kit I (Roche) according to the manufacturer's instructions. The coverslips were subsequently mounted for immunofluorescence analysis.
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4

Astrocyte Proliferation and Activation

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After scraping the culture, astrocytes were fixed by 4% PFA at different time points, and incubated with primary antibodies (anti-GFAP antibody, 1:500; Dakocytomation; or anti-chondroitin sulfate antibody [CS-56], 1:200, Abcam) at 4°C overnight. Astrocytes were then rinsed with PBS, and incubated with a secondary antibody (FITC-goat anti-rabbit polyclonal, TRITC-goat anti-mouse polyclonal, Sigma) for 2 h at room temperature. Nuclei were counterstained with 4', 6-diamidino-2-phenylindole. To measure the proliferation of astrocytes, BrdU (1:1000) was added to the culture medium at the different time points after the scraping injury (12, 24, and 48 h). Procedures were performed according to instructions described in the 5-Bromo-2′-deoxy-uridine Labeling and Detection Kit I (Roche, USA). Representative sections were then observed with epifluorescence using a Leica microscope.
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5

Primary mouse alpha-cell proliferation and apoptosis

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Primary mouse alpha-cell proliferation was evaluated by BrdU incorporation for 48 h after transfection of miRNA mimics and inhibitors. BrdU+ cells were labeled with 5-Bromo-2‘-deoxy-uridine Labeling and detection Kit I (Roche). Alpha-cell apoptosis was evaluated 48 h after transfection by TUNEL staining with In Situ Cell Death Detection Kit, TMR red (Roche) or immuno-labeling with anti-active Caspase-3 primary antibody (1:25) (ab2302, abcam) and Alexa Fluor 568 antirabbit (1:500) secondary antibody. Co-staining for glucagon with rabbit anti-glucagon (1:500; Millipore Corporation) primary antibodies and Alexa Fluor 488 antirabbit (1:1,000) secondary antibodies was realized in parallel to BrdU or TUNEL and active Caspase-3 staining. At least 35 independent fields in each condition were captured with an Evos FL fluorescence microscope (Life Technologies) and automatically analyzed with Metamorph software to determine apoptotic and proliferative rates.
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6

BrdU Incorporation Assay for Cell Proliferation

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Cells were plated onto coverslips in 6-well culture plates in complete BEBM and cultured with or without growth factors for 48 and 72 h. BrdU was added 60 min prior to processing. Detection of BrdU incorporation was carried out according to manufacturer's instructions (5-Bromo-2′-deoxy-uridine Labeling and Detection Kit I, Roche Diagnostics) and visualized by microscopy (Axioplan 2, Zeiss). BrdU incorporation was measured by counting positive nuclei in a total of 500 cells in triplicate experiments.
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7

Measuring Cell Proliferation in Rat Tibias

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BrdU (05650, Nacalai Tesuque, Kyoto, Japan) was IP injected into three-week-old CNP KO rats or WT rats at a dose of 50 μg/g body weight 2 h before being sacrificed. Target skeletal tissues were harvested, fixed overnight at 4°C in 4% paraformaldehyde solution, and decalcified for two weeks in 0.5 M EDTA. Decalcified samples were embedded in paraffin and sectioned. BrdU-positive cells were detected using a BrdU-specific antibody (5-Bromo-2´-deoxy-uridine Labeling and Detection Kit I, Roche Diagnostic GmBH, Germany). The number of BrdU-positive nuclei was determined per one slice of growth plate specimen of the proximal tibia.
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8

Femoral Artery Wire Injury Model

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The femoral arteries of mice were subjected to wire injury. After surgery, the mice were intraperitoneally injected with 1 mg Brdu and followed with infusion of Brdu using 7-day osmotic minipump (Alzet, Cupertino, CA, USA) at a rate of 60 µg/day for 7 days. The mice were killed and perfused with 4% PFA after killing and femoral artery was dissected. The femoral artery was embedding in paraffin and 5-μm sections were cut. After blocking and antigen retrieval, the slides were incubated with indicated antibodies. BrdU was stained with a 5-Bromo-2′-deoxy-Uridine Labeling and Detection Kit I (Roche, Indianapolis, IN, USA) following the kit instruction. Anti-SM22α antibody was obtained from Abcam (catalogue number: ab10135) with 1:200 dilution. Second antibody was DyLight 549 Streptavidin (Vector laboratories, Burlingame, CA, USA).
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9

Visualization of Cardiomyocyte DNA Synthesis

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BrdU (30 μM, Sigma) was added to the medium of cardiomyocytes to examine DNA synthesis. To inhibit DNA polymerization, cytosine-D-arabinofuranoside (araC) (10 μM, Sigma) was added to the dishes. Mitosis was determined by visualization of nuclei stained positive for an antibody to phosphorylated histone H3 (H3P). An antibody against aurora B kinase (Sigma-Aldrich, Cat.# A5102) was used to visualize cytokinesis. Signals were visualized with secondary antibodies conjugated to donkey anti-rabbit (FITC, Jackson Immunoresearch). BrdU was stained with a 5-Bromo-2′-deoxy-uridine Labeling and Detection Kit I (Roche Applied Science) and nuclei were visualized with 4′,6′-diamidino-2-phenylindole (DAPI, Invitrogen). Fluorescence imaging was performed with an Olympus BX41 (Olympus America Inc., Melville, NY, U.S.A.) equipped with epiflouresence microscopy, and images were recorded using a digital camera with MagnaFire 2.1 software.
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10

BrdU Labeling and Detection Protocol

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Cells were fixed in 3% paraformaldehyde EM grade (Electron Microscopy Sciences) for 15 min at RT. Cells were washed three times in PEM (100 mM Pipes, 1 mM EGTA, 1 mM MgSO4 pH = 6.9) and once in PEMS (PEM plus 1.2 M Sorbitol). Cells were treated with 0.5 mg/mL Zymolyase-100T (Seikagaku) for 1 h at 37°C. Cells were permeabilized in PEMS plus 0.5% Triton X-100 and incubated in ice for 10 min. Cells were then washed in PEM and incubated in PEMBAL (PEM + 1% BSA, 100 mM Lysine hydrochloride, 0.1% NaN3, pH = 6.9) containing 5 mM MgSO4 for 30 min. BrdU epitopes were exposed by incubating cells for 2 h at 37°C in PEMBAL containing 5 mM MgSO4, nucleases from the 5-Bromo-2′-deoxy-uridine labeling and detection kit I (Roche), and mouse anti-BrdU antibody (BD Biosciences, 347580). Cells were then washed three times with PEMBAL and incubated overnight with mouse anti-BrdU antibody (BD Biosciences, 347580). Cells were then washed three times in PEMBAL, incubated with Alexa Fluor 488 goat anti-mouse antibody (Invitrogen, A-11029) for 3 h, washed in PEMBAL, in PBS, and stained with DAPI. Alternatively, for heat denaturation, after permeabilization, cells were recovered in PEMS and incubated for 10 min at 95°C, followed by incubation in an ice/H2O bath for 5 min.
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