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11 protocols using mouse secondary antibody

1

Immunoblotting Using Common Antibodies

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SDS–PAGE was performed on Bio-Rad Mini-PROTEAN systems using standard protocols. For immunostaining, proteins were transferred onto 0.2-µm nitrocellulose membranes (Amersham Protran). Immunoblots were probed with primary antibodies and goat secondary antibodies coupled to alkaline phosphatase, and developed in alkaline buffer in the presence of 5-bromo-4-chloro-3-indolylphosphate and nitro-blue tetrazolium. The anti-HA (HA-7 clone, Sigma Aldrich), anti-FLAG (M2 clone, Sigma Aldrich), anti-StrepII (Sigma Aldrich), anti VSV-G (Sigma Aldrich) and anti-5His (Sigma Aldrich) monoclonal antibodies, and mouse secondary antibodies (Millipore) were purchased as indicated.
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2

Western Blot Analysis Protocol

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SDS-PAGE was performed on Bio-Rad Mini-Protean systems using standard protocols with homemade 12.5% polyacrylamide gels. For immunostaining, proteins were transferred onto 0.2-μm nitrocellulose membranes (Amersham Protran) with a Mini-Trans Blot cell (Bio-Rad). The membrane was then saturated in 5% milk and probed with primary antibodies. Mouse secondary antibody coupled to alkaline phosphatase was added and developed in alkaline buffer in the presence of 5-bromo-4-chloro-3-indolylphosphate and nitroblue tetrazolium. The antihemagglutinin (HA) (HA-7 clone; Sigma-Aldrich), anti-Flag (M2 clone; Sigma-Aldrich), anti-StrepII (Sigma-Aldrich), anti-5His (Sigma-Aldrich) monoclonal antibodies, and mouse secondary antibodies (Millipore) were purchased as indicated.
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3

Immunoblotting Techniques for Protein Detection

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SDS-PAGE was performed on Bio-Rad Mini-PROTEAN ® systems using standard protocols. For immunostaining, proteins were transferred onto 0.2-µm nitrocellulose membranes (Amersham Protran). Immunoblots were probed with primary antibodies and goat secondary antibodies coupled to alkaline phosphatase, and developed in alkaline buffer in presence of 5-bromo-4-chloro-3indolylphosphate and nitro-blue tetrazolium. The anti-HA (HA-7 clone, Sigma Aldrich), anti-Flag (M2 clone, Sigma Aldrich), anti-StrepII (Sigma Aldrich), anti VSV-G (Sigma Aldrich) and anti-5His (Sigma Aldrich) monoclonal antibodies, and mouse secondary antibodies (Millipore) were purchased as indicated.
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4

Western Blot Analysis of hOE-MSC Proteins

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For analyses by western blotting, hOE-MSCs were collected by trypsination, counted and then centrifuged for 5 min at 300 g. Cell pellets were resuspended in 1× SDS loading buffer, heated at 95°C during 5 min, then each cell lysate was resolved by 8% SDS-PAGE and transferred onto a PVDF membrane (Thermo Scientific, Rockford, IL). After blocking membrane with 5% milk in PBS (Life Technologies, Gibco, Grand Island, NY) supplemented with 0.1% Tween-20 (Sigma-Aldrich, St. Louis, MO) (PBS-T), membrane was incubated at 4°C overnight with mouse monoclonal primary antibodies against IKAP diluted at 1:2000 (clone no 33, BD Biosciences, Franklin Lakes, NJ), anti-NOVA1 at 1:300 (cat. no WH0004857M7, Sigma-Aldrich, St. Louis, MO) or anti-β-actin at 1:10,000 (cat. no A2228, Sigma-Aldrich, St. Louis, MO) in 2.5% milk in PBS-T. Thereafter, membrane was then probed with mouse secondary antibodies diluted at 1:3500 (Sigma-Aldrich, St. Louis, MO) in 2.5% milk in PBS-T at room temperature for 45 min, and revealed by exposing pre-incubated membrane with ECL (ThermoScientific, Rockford, IL) using a G:BOX Chemi XT4 device (Syngene, Cambridge, UK). β-actin was used for normalization as the housekeeping protein.
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5

Western Blot Analysis of IKAP/hELP1

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Cell pellets were resuspended in 1X SDS loading buffer at 6x10 3 cells/µL, and then samples were heated at 95°C during 5 min. Thereafter, total protein from 10 µl of cell lysates were separated on 10% SDS-polyacrylamide gel electrophoresis and transferred to a PVDF membrane (Thermo Fisher Scientific, Rockford, IL). Membranes were blocked with 5% Milk in PBS supplemented with 0.1% Tween-20 (Sigma-Aldrich, St. Louis, MO) buffer for 1h at room temperature, and were then subsequently probed at 4°C overnight with mouse monoclonal anti-IKAP/hELP1 antibody diluted at 1:2000 (BD Biosciences, Franklin Lakes, NJ) in 2.5% Milk in PBST, followed by incubation with mouse secondary antibodies at 1:3500 (Sigma-Aldrich). As a control of equal protein loading, membranes were also probed with mouse anti-β-actin primary antibody used at 1:10000 (Sigma-Aldrich). Stained proteins were revealed by chemiluminescent detection using ECL detection kit (Thermo Fisher Scientific, Rockford, IL) on a G:BOX Chemi XT4 device (Syngene, Cambridge, UK).
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6

Cell Signaling Pathway Analysis

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RPMI-1640 and McCoy's 5A medium, fetal bovine serum (FBS), penicillin and streptomycin were purchased from Lonza Milano SRL (Milan, Italy). ZSTK474, BYL719, TGX221, AS605240, CAL101, IPI145, Imatinib, Nilotinib and GZD824 were obtained from Selleck Chemicals (Houston, TX, USA). For cell viability determination, CellTiter 96 Aqueous One Solution Cell Proliferation Assay (MTS) was purchased from Promega (Milan, Italy). Annexin V/7-ADD detection kit was from Merck-Millipore (Darmstadt, Germany). Western blot antibodies for total Akt-1, Ser473 p-Akt-1 and Thr308 p-Akt-1 were from Santa Cruz Biotechnology (Santa Cruz, CA, USA), while all the other antibodies were from Cell Signaling Technology (Danvers, MA, USA), including the rabbit secondary antibody. Chloroquine, the mouse secondary antibody and the monoclonal β-Actin antibody were purchased from Sigma Aldrich (Milan, Italy). Signals were detected using ECL Plus reagent from Perkin Elmer (Boston, MA, USA).
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7

Western Blot Analysis of PLK1

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The total protein of the three groups were extracted using RIPA buffer (Beijing Kangwei Reagent Co., Ltd., Beijing, China). Then, proteins were quantified, isolated and transferred onto the PVDF membranes (Roche, Basel, Switzerland). The primary antibody of PLK1 (mouse-anti-human, Millipore Corp, Billerica, MA, USA) was diluted at 1:1,000, then uniformly dropped on the membrane, and left to incubate overnight at 4 °C. After washing the membrane, a mouse secondary antibody (1:1,000, Sigma, USA) was incubated at room temperature for 1.5 h and then visualized using the Kangwei Colorimetric Kit (Beijing, China). At the same time, β-actin was established as an internal reference. Each sample was performed in triplicate.
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8

Exosome Protein Expression Analysis

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The BCA protein assay was used for ensuring that equal concentrations of exosomes were prepared for SDS–polyacrylamide gel electrophoresis (SDS-PAGE). After SDS-PAGE, samples were transferred to nitrocellulose membranes. The blots were incubated overnight at 4°C with the following primary antibodies: VSV-G (clone: P5D4), Alix (clone: H270), CD63 (clone: MEM-259), Tsg101 (clone: 4A10), CD81 (clone: sc-166029), GFP (ab 290, ChIP grade), and LDLR (clone: EP1553Y). Next, the membranes were probed with horseradish peroxidase–conjugated anti-rabbit (Sigma-Aldrich) or mouse secondary antibody (Sigma-Aldrich). Last, the blots were visualized with enhanced chemiluminescence reagents (Bio-Rad).
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9

Evaluating Anti-Cancer Drug Responses in Cells

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RPMI-1640 medium, fetal bovin serum (FBS), penicillin and streptomycin were from Lonza (Lonza Milano SRL, Milan, Italy). Imatinib, Nilotinib, RAD001, GZD824, GSK690693, XL-147, MK-2206, ZSTK474, BGT226, KU0063794, CCI-779, AZD8055 and Torin-2 were provided by Selleck Chemicals (Houston, TX, USA). For cell viability determination, CellTiter 96(R) AQueous One Solution Assay (MTS) was purchased from Promega (Milan, Italy). Annexin V/7-AAD, Cell Cycle, Autophagy LC3 Activation detection kits were used for the analysis with the Muse™ Cell Analyzer from Merck-Millipore (Milan, Italy). All the antibodies were from Cell Signaling Technology (Danvers, MA, USA), including the rabbit secondary antibody. The mouse secondary antibody was from Sigma Aldrich (Milan, Italy). Signals were detected with the ECL Plus reagent purchased from Perkin Elmer (Boston, MA, USA).
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10

Measuring Protein Synthesis by SUnSET

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Protein synthesis was measured using the SUrface SEnsing of Translation (SUnSET) method [39 (link)] which measures the incorporation of puromycin into nascent peptide chains. At 24 h after transfection, N2a cells were incubated in puromycin treatment media (1 μg/mL puromycin in DMEM (10% FBS, 1% P/S)). After a 30-min incubation at 37°C, puromycin treatment media was removed and cells were incubated with DMEM (10% FBS, 1% P/S) for 15 min. Cells were then washed with PBS two times and harvested for cell lysis. 20 μg of protein was separated on a 10% SDS-PAGE gel. Proteins were transferred to PVDF membrane using a Trans-Blot Turbo Transfer System (25 V, 1.3 A constant for 20 min; BioRad) and subsequently incubated in TBST buffer containing 5% BSA. Membranes were then incubated overnight with a monoclonal puromycin antibody (clone 12D10, EMD Millipore, Temecula, CA, United States, diluted 1:5000 in TBST and 5% BSA w/v), then washed three times with TBST and 1% BSA for 10 min each. Membranes were incubated for 2 h in TBST containing 3% skim milk plus a secondary mouse antibody (Sigma-Aldrich, 1:5000) then washed three times with TBST for 15 min each. Membranes were visualized on BioRad ChemiDoc imaging system. The total lane density was analysed using Image J [40 (link)].
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