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5 protocols using cd45ro pacific blue

1

Comprehensive T-cell Immunophenotyping Protocol

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Flow cytometry antibodies used for surface marker staining are listed as follows. Antibodies from BD Biosciences include: CD3‐BUV395 (Clone UCHT1; cat #563 546), CD4‐BV786 (Clone SK3; cat #563 877) and CD8‐PE‐Cy7 (Clone SK1; cat #335 787). Antibodies from Biolegend include: CD3‐FITC (Clone UCHT1; cat #300 406), CCR7‐PE (Clone G043H7; cat #353 204), CD45RA‐APC (Clone HI100; cat #304 112), CD45RO‐Pacific Blue (Clone UCHL1; cat #304 215),CD27‐Pacific Blue (Clone M‐T271; cat #356 413), CD28‐FITC (Clone CD28.2; cat #302 906), CD28‐PE (Clone CD28.2; cat #302 907), CD95‐FITC (Clone DX2; cat #305 605), CD127‐Brilliant Violet 785 (Clone A019D5; cat #351 329), TIM‐3‐Pacific Blue (Clone F38‐2E2; cat #345 041), CD57‐FITC (Clone HNK‐1; cat #359 603), LAG‐3‐Brilliant Violet 785 (Clone 11C3C65; cat #369 321) and human TruStain FcX reagent (Cat #422 302). Antibodies for intracellular staining include granzyme B‐PE (BD Biosciences, GB11; cat #561 142), IFN‐γ‐FITC (Miltenyi Biotec, cat #130‐090‐433), IL‐2‐PE (Miltenyi Biotec, cat #130‐090‐487) and TNF‐α‐APC (Miltenyi Biotec, cat #130‐091‐267).
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2

Multiparametric Analysis of Activated T Cells

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For functional analysis of T cells, patients’ PBMCs before and after treatment were stimulated with antiCD3/CD2/CD28 beads (Miltenyi Biotec) for 48 h in a ratio 2:1 (cells:beads) in a high-density system (17 (link)). After incubation, T-cell activation phenotype was analyzed by flow cytometry using different combinations of the following antibodies: TCR α/β fluorescein isothiocyanate (FITC; Thermo Scientific), CCR7 PE, CD8 PE/Dazzle 594 (Biolegend), phospho-mammalian target of rapamycin (mTOR) (p-mTOR) PerCP eFluor 710 (Ser2448; Thermo Scientific), p-AKT PE-Cy7 (Ser473; Thermo Scientific), p-ZAP70 AF 647 [(Tyr319)/Syk Phospho (Tyr352); Biolegend], CD69 Allophycocyanin (APC)-Cy7 (Biolegend), CD25 Alexa Fluor 700 (Biolegend), CD3 Brilliant Violet 510 (Biolegend), and CD45RO Pacific Blue (Biolegend). CD4 population was defined by CD3-positive CD8-negative lymphocytes. The staining, fixation, and permeabilization processes were done using IntraStain kit as described by the manufacturer (Agilent Dako).
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3

Quantifying CD4+ T-cell Proliferation Suppression

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Either ex vivo- or 7-day-cultured CD4+ T-cells were placed in flow cytometric suppression assays, as described previously [11 , 13 (link), 14 (link)]. Briefly, responder CD4+ T-cells were stained with CFSE, followed by culture 1 μg/ml of fixed anti-CD3 (eBiosciences, 16-0037-85) and 1μg/ml of fixed anti-CD28 (eBiosciences, 16-0289-85) in the presence or absence of ex vivo sorted autologous bulk CD8+ T-cells at 1:0, 1:1 and 1:0.5 CD4:CD8 cell concentrations. On day 7 of culture, cells were stained for anti-CD4 PE-Cy7 (BD, 557852), anti-CD3 AlexaFluor700 (BD, 557943), anti-CD8 Pacific Blue (Biolegend, 344718) and flow cytometrically assessed for CD4 proliferating fraction (CFSE dilution). Percent proliferation and percent suppression were calculated as described previously [13 (link)]. Other antibodies utilized include: CD45RO Pacific Blue, Biolegend 304216; CD45RO PE, Biolegend 304244; CD45RA Fitc, BD 555488; CD8 PE, BD 340046; CD8 BV786, BD 563823; CD4 BV786, BD 563877; CD4 APC, BD 561841; CD4 PE, BD 555347; CD3 APC, Biolegend 300412; CD25 PE, BD 555432; CD25 APC, BD 555434; CD25 PacBlue, Biolegend 356130. Cells were analyzed on a BD LSRII or Cytek Aurora. Data were analyzed with FlowJo software v10.
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4

Phenotypic and Functional Profiling of T Cells

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For suppression assays, cells were washed with 0.1% (w/v) sodium azide/phosphate-buffered saline (Mediatech Cellgro) on day 7 of in vitro stimulation and were stained with anti-CD4 PECy5 (BD Pharmingen), anti-CD8 Pacific Blue (Biolegend), and anti-CD25 APCCy7 (BD Pharmingen. For surface phenotyping of cells, bulk PBMCs and enriched CD8+ T cells were stained with anti-CD3 Alexa 700 (BD Pharmingen), anti-CD8 AmCyan (BD Biosciences), anti-CD27 APCCy7 (Biolegend), anti-CD28 APC (BD Pharmingen), CD45RO Pacific Blue (Biolegend), anti-CD62L PECy5 (BD Pharmingen), and anti-CD57 PE (Southern Biotech). For intracellular staining of cytokines, cells were initially activated with 1 μL of leukocyte activation cocktail (BD Pharmingen) for 5 hours. Cells were surface stained with anti-CD8 APC (BD Biosciences), anti-CD4 PECy5 (BD Pharmingen) and anti-CD25 APCCy7 (BD Pharmingen) and permeabilized as described previously. Intracellular staining was performed using anti-IFNγ PECy7 (BD Pharmingen), anti-IL-17A PE (Ebioscience), anti-Granzyme B Alexa 700 (BD Pharmingen) and anti-Perforin Pacific Blue (BD Pharmingen). All cells were resuspended in 1% paraformaldehyde (Electron Microscopy Sciences, Hatfiled, PA) for FACS analysis. Flow cytometric data were acquired on a 4-Laser, 17-color LSRII using FACSDiva software (Becton Dickinson). CFSE was detected in the FITC channel on the LSR.
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5

Phenotypic Characterization of in vitro Generated mDC and DC-10

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The phenotype of in vitro generated mDC and DC-10 was evaluated by flow cytometry. The expression of the following surface markers was tested after culture: CD1a (anti-CD1a Alexa488), CD14 (anti-CD14 APC-H7), CD16 (anti-CD16 APC-H7), and CD86 (anti-CD86 PE). All monoclonal antibodies were obtained from BD Pharmingen (San Jose, CA). Cells were washed 2 times with (PBS, 0.5-1%, 10% fetal bovine serum, 0.1% NaN3 sodium azide) and incubated at room temperature for 30 minutes. The Tr1 cell enrichment in the CD4/mDC and CD4/DC-10 cell products was evaluated with the following monoclonal antibodies: CD3 PerCp-Cy5.5 (Biolegend), CD4 Pe-Cy7 (BD Bioscience, San Jose, CA), CD45RO PacificBlue (Biolegend), LAG-3 PE (R&D System), CD49b Alexa488 (Biolegend). Cells were incubated at 37 °C for 30 minutes instead of room temperature. Samples were acquired using the BD FACSCanto II (Becton Dickinson, San Jose, CA) and data were analyzed with FlowJo software.
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