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7 protocols using ft ir 6100 spectrophotometer

1

Synthesis and Characterization of Rhenium Acetonitrile Complexes

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The starting materials and solvents
were obtained commercially
and used as supplied. The acetonitrile complexes [ReX(CH3CN)2(CO)3] (X = Cl, Br) were synthesized32 (link) from the corresponding [ReX(CO)5]
(X = Cl and Br)33 (link) obtained from commercial
[Re2(CO)10]. Elemental analyses (carbon, hydrogen,
nitrogen, and sulfur) were carried out on a FlashEA 1112 Series microanalyzer.
IR spectra were recorded in the solid phase by attenuated total reflectance
(ATR; 4000–400 cm–1) on a Jasco FT/IR-6100
spectrophotometer. 1H NMR spectra were obtained on a Bruker
AMX 400 spectrometer. Mass spectrometry (MS) (positive-ion ESI) was
carried out on a microTOF-Focus (Bruker Daltonics) mass spectrometer.
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2

Analytical Characterization of Organic Compounds

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Reagents and solvents used in this study were of analytical grade purity and purchased from Sigma-Aldrich Chemicals (Buchs, Switzerland) and Alfa Aesar (Karlsruhe, Germany). The progress of all reactions was checked by thin layer chromatography (TLC) using precoated Silica Gel 60F254 sheets (Merck, Darmstadt, Germany). The spots on plates were visualized under UV light (254 nm). Melting points (m.p.) were determined using an MPM-H1 melting point apparatus (Schorpp Gerätetechnik, Überlingen, Germany) and are uncorrected. Elemental analyses for C, H, N and S were carried out on a Vario El CHNS instrument (Hanau, Germany). FT-IR spectra were recorded on a JASCO FT-IR-6100 spectrophotometer (Cremella, Italy). 1H-NMR and 13C-NMR analyses were performed on an Avance NMR spectrometer (Bruker, Karlsruhe, Germany), operating at 500 MHz and 125 MHz respectively, in DMSO-d6, using tetramethylsilane (TMS) as internal standard. Chemical shifts (δ values) are expressed in parts per million (ppm). M + 1 peaks were determined on an Agilent 1100 series and an Agilent Ion Trap SL mass spectrometer (Santa Clara, CA, USA), operating at 70 eV.
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3

Purification and Characterization Protocols

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The solvents were purified and dried by standard
procedures before use. Melting points were uncorrected. 1H NMR and 13C NMR spectra were recorded with a Bruker
ARX-400 spectrometer (400 MHz for 1H NMR; 100.61 MHz for 13C NMR) using tetramethylsilane (TMS) as internal standard
(chemical shifts in δ values; J in hertz).
Flash chromatography (FC) was performed on silica gel (Merck 60, 230–400
mesh); analytical thin-layer chromatography (TLC) was performed on
plates precoated with silica gel (Merck 60 F254, 0.25 mm); mass spectra
(FAB, EI) were recorded using FISONS VG, and electron spray ionization
(ESI-MS) spectroscopy was performed using a Bruker FTMS APEX III.
Melting points were obtained in open capillary tubes and were not
corrected. Optical rotations were obtained using a Jasco P-2000 polarimeter.
IR spectra were recorded with a JASCO FT/I(R)-6100
spectrophotometer.
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4

Comprehensive Analytical Characterization

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A JEOL ECA-500 II NMR spectrometer was used to record NMR spectra at 500 MHz for 1H and 125 MHz for 13C. DMSO-d6 or CDCl3 were used to dissolve NMR samples. Chemical shifts δ were standardized to the solvent resonances. A Thermo Scientific ISQ Quantum Access MAX Triple Quadrupole system, Xcalibur 2.1 software, and USA Mass Spectrometer were used. Jasco′s FT/IR-6100 spectrophotometer was used to record IR spectra on KBr discs. The “Galen Kamp-type” melting point apparatus was used. Polarimeter models from Rudolph Research Analytical, USA, were used to detect optical rotation. Material for column chromatography: silica gel (Merck, 70–230 mesh), Sephadex LH-20 (Sigma–Aldrich Chemical Co. St. Louis, MO, USA), ODS (RPC18, Merck, Germany), silica gel F254 (Merck, 70–230 mesh). Camag UV lamps at 254 and 366 nm were used to observe the results. For spot detection, AlCl3 or 10% sulfuric acid spray reagents were used independently.
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5

Compositional Analysis of Ammonia-Pretreated Bagasse

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The compositions (neutral sugars, organic acids, lignins and nitrogen content) of untreated and ammonia-pretreated bagasses were analyzed according to a previously described method. 15) The Fourier transform infrared spectroscopy (FT-IR) spectrum was measured using an FT/IR-6100 spectrophotometer (JASCO, Tokyo, Japan) in transmittance mode from 4000 to 400 cm −1 in a KBr disc. The KBr disc was prepared by dispersing the solid sample in KBr salt. For analysis of the solubilized hydrolysis products of control and pretreated bagasse samples, the reaction mixtures described above were subjected to high-performance liquid chromatography and assessed using an IR detector (LC-2000Plus, JASCO, Tokyo, Japan). The samples were analyzed using an HPX-87P column (7.8 × 300 mm, Bio-Rad, Hercules, CA, USA) and eluted with distilled water at a flow rate of 0.6 mL/min at 70 °C.
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6

Spectroscopic Analysis of Fungal Taxol

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The absorbance of the putative Taxol from the most potent fungal isolate was measured by UV–Vis spectrophotometry at wavelength range 200–400 nm. The concentration and purity of the extracted sample were assessed, compared to the authentic Taxol, with methanol for zeroing the spectrophotometer [16 (link)]. The Infra-Red (FT-IR) spectra of the sample were determined using a JASCO, FTIR 6100 Spectrophotometer, sample was pulverized in KBr pellets, and the spectra were recorded from 4000 to 500 cm−1.
The identity of the purified Taxol was resolved by the LC–MS/MS with a Thermo Scientific LCQ Deca mass spectrometer and Hypersil Gold aQ (C18 column) equipped with a positive ion mode electrospray source. The gradient elution mobile phase system of solution A (0.1% formic acid) and B (acetonitrile in 0.1% formic acid), was used with at 0.2 mL/min for 40 min, with a mobile phase B gradient ranging from 2 to 98% [16 (link), 17 (link), 21 (link)]. The chemical features of the committed signals were assessed by analyzing their fragmentation pattern with the NIST mass spectral library.
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7

Synthesis and Characterization of Bis(4-pyridylthio)methane

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Bis(4-pyridylthio)methane (SCS) was prepared as described previously. 13 The other starting materials and solvents were obtained commercially and were used as supplied. Ibuprofen was used as a racemic mixture. Elemental analyses (C, H, N, S) were carried out on a Fisons EA-1108 microanalyser. IR spectra were recorded from KBr discs (4000-400 cm -1 ) on a Jasco FT/ IR-6100 spectrophotometer. 1 H-NMR spectra were obtained on a Bruker AMX 400 spectrometer. Mass spectra (ESI + ) were recorded on a Hewlett-Packard 5989A spectrometer. UV-Vis spectra were recorded on a Jasco V-670 spectrophotometer. TGA was performed on a SETSYS Evolution Setaram thermogravimetric analyser in a flow of N 2 at a heating rate of 10 °C min -1 .
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