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4 protocols using imatinib

1

Establishing Imatinib-Resistant BCR-ABL Clones

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WT‐, M351T‐, Y253F‐ or T315I‐BCR‐ABL‐transformed clones of mouse pro‐B Baf3 cells (Baf3p210 cells) were gifted from Brian J. Druker, Oregon Health and Science University Cancer Institute.18 WT‐BCR‐ABL positive human ALL cell line TCCY was established as reported previously.19 To establish imatinib‐resistant clone having T315I‐mutated BCR‐ABL, the WT‐BCR‐ABL‐harboring TCCY cells were treated with imatinib by gradually increasing the concentration (3‐20 μM). The dead cells were washed out every 3 to 4 days, and the resistant subclones were isolated by limiting dilution. Cells were tested for Mycoplasma contamination by using a MycoAlert Mycoplasma Detection Kit (LT07‐118; Lonza, Rockland, ME, USA). Cells were cultured under an atmosphere of 95% air and 5% CO2 at 37°C in RPMI‐1640 medium (189‐02025; Invitrogen, Carlsbad, CA, USA) supplemented with 10% heat‐inactivated FBS (Sigma‐Aldrich, St Louis, MO, USA). Chemical structure and synthesis of AIC‐47 were reported previously.8 AIC‐47 and imatinib (I0936; Tokyo Chemical Industry, Tokyo, Japan) were dissolved in DMSO and added to the cell culture medium at a final concentration of DMSO (<0.3%), which showed no significant effect on the growth and differentiation of the cells (data not shown). Viable cell numbers were measured by carrying out the Trypan‐blue dye‐exclusion test.
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2

Teratogens Screening in Zebrafish

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Test compounds used in this study are listed in Table 1. These tested compounds are known to be teratogens inducing cleft palate in mammals and have been classified into various categories as a result of being tested in zebrafish experiments or chemical safety assays (Hillegass et al., 2008 (link); Selderslaghs et al., 2009 (link); Ito and Handa, 2012 (link); Lee et al., 2012 (link); Teixido et al., 2013 (link); Yamashita et al., 2014 (link); Inoue et al., 2016 (link); Martinez et al., 2018 (link); Cassar et al., 2019 (link)). The test compounds and exposure concentrations were determined based on Liu et al., 2020 (link). The exposure concentrations were as follows: hydroxyurea (1 mM, Sigma-Aldrich), valproic acid (7.5–30 μM, Wako), salicylic acid (100–400 μM, Wako), boric acid (1 mM, Wako), and caffeine (0.5–2 mM, Wako), which were diluted from stock solutions prepared with distilled water (Life Technologies), and imatinib (250 μM, Tokyo Chemical Industry), retinoic acid (10–50 nM, Tokyo Chemical Industry), thalidomide (400 μM, Tocris Bioscience), methotrexate (50–200 μM, Wako), warfarin (15–60 μM, Wako), phenytoin (1 mM, Wako), dexamethasone (1 mM, Wako), 5-fluorouracil (1 mM, Wako), and isoniazid (1 mM, LKT Laboratories), which were diluted from stock solutions prepared with dimethyl sulfoxide (DMSO, Wako).
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3

Phosphorylation Profiling of Kinase Inhibitors

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Dasatinib was purchased from BioVision (Mountain View, CA) and dissolved in dimethyl sulfoxide (DMSO) at a concentration of 300 μmol/L. Imatinib and nilotinib were purchased from Tokyo Chemical Industry (Tokyo, Japan) and ChemScene (Monmouth Junction, NJ) and dissolved in DMSO at a concentration of 2 mmol/L, respectively.
Antibodies for immunophenotyping, including phycoerythrin (PE)‐conjugated anti‐CD56 IgG, PC5‐conjugated anti‐CD8 IgG, PC7‐conjugated anti‐CD3 IgG, and each isotype control IgG were purchased from Beckman Coulter (Brea, CA). Fluorescein isothiocyanate (FITC)‐labeled polyclonal rabbit IgG antibodies for phosphorylated proteins, including pJAK1 (Y1034, #3238R), pJAK2 (Y1007, #2485R), pSTAT1 (Y701, #1657R), pSTAT3 (Y705, #1658R), pERK (T202/Y204, #1646R), pJNK (T183/Y185, #1640R), pp38 (T180/Y182, #2210R), pAKT (Y315, #5193R), and isotype control (#0295P) were purchased from Bioss (Wobun, MA, USA).
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4

Imatinib and Atropine Protocol

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imatinib mesylate (hereafter imatinib) was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Isopto atropine eye drop (1% atropine sulfate) was obtained from Alcon Laboratories (Ft. Worth, TX). Benzalkonium chloride (BAC) and other standard reagents were purchased from Sigma-Aldrich (St. Louis, MO). Primary antibodies for lymphocyte-specific protein 1 (LSP1) and F4/80 were purchased from Abcam (Cambridge, UK), and DDR-1 was obtained from Novus Biologicals (Littleton, CO). The secondary antibody used in this study, goat anti-rabbit IgG antibody conjugated with tetramethylrhodamine isothiocyanate, was purchased from Santa Cruz Biotechnology (Dallas, TX).
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