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10 protocols using anti gata6

1

Immunocytochemistry of Adherent Cells

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Immunostaining of adherent cells was performed as previously described (Schröter et al., 2015 (link)). Antibodies used were anti-NANOG (Thermo Fisher Scientific, 14-5761-80, final concentration 2.5 µg/ml), anti-GATA6 (rabbit polyclonal, Invitrogen, PA1-104, final concentration 5 µg/ml), anti-GATA6 (goat polyclonal, R&D AF1700, final concentration 1 µg/ml), anti-laminin (Sigma-Aldrich, L9393, final concentration 0.5 µg/ml), anti-SOX17 (R&D AF1924, final concentration 1 µg/ml), and anti-FLAG (Sigma-Aldrich, F1804-200, final concentration 1 µg/ml). Secondary antibodies were from Invitrogen/LifeTech. Images were acquired using a 63× 1.4 N.A. oil-immersion objective on a confocal Leica SP8 microscope, with all settings held constant between replicates. Images were quantified using custom scripts written for ImageJ (NIH) and in MATLAB (The MathWorks).
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2

Protein Analysis of Heart Tissue

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Protein was extracted from fibroblasts of adult mouse hearts or whole heart tissue of Gata4/6-Per-Cre or Gata4/6 control mice as indicated, separated on an SDS–polyacrylamide gel under reduced denaturing conditions and subsequently blotted onto a PVDF membrane following standard procedures. Applied primary antibodies were anti-GATA-4 (1:1000, Santa Cruz, sc-1237), anti-GATA-4 (1:100, Santa Cruz, sc-25310), anti-GATA-6 (1:1000, R and D systems, AF1700) anti-GAPDH (1:3000, Fitzgerald, 10R-G109a) or anti-Actin (1:10,000, Sigma-Aldrich, A2066). Protein levels were quantified using Quantity One software (Bio-Rad).
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3

Pancreatic Cancer Tissue Profiling

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Two human pancreatic tissue cohorts were used in this study. The expression of UTX was analyzed in cohort #1 with 84 primary PDA, 84 adjacent pancreatic intraepithelial neoplasia (PanIN), and normal pancreatic tissue specimens (US Biomax). Correlation analysis of GATA6 and UTX protein expression was performed using cohort #2 with 60 PDA tissues. Immunohistochemical analyses of these specimens and xenografts were conducted with anti-GATA6 (R&D), anti-UTX (Bethyl Laboratories), and anti-Ki67 (Santa Cruz Biotechnology) antibodies as described previously.20 (link), 21 (link), 22 (link), 23 (link)
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4

Characterization of Cell Lineages

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Cells were stained with primary anti-BRA (R&D), anti-GATA6 (SC) and anti-Sox17 (R&D), and secondary anti-goat- or anti-rabbit-Alexa488 (Molecular Probes) antibodies. Images were acquired on an Olympus IX71 inverted microscope and processed in LSM Viewer or ImageJ. Cell counting was performed using Matlab.
Western blot was performed as described [12 (link)] with anti-phospho-SMAD2/3 (Cell Signaling), anti-SMAD2/3 (Transduction Laboratories), anti-α/β-tubulin (Cell Signaling) and secondary HRP antibodies.
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5

Immunofluorescence Analysis of Nanog Mutant Embryos

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Wild-type CD1 and Nanog+/+, Nanog+/- and Nanog-/- embryos were generated by in-house breeding and natural mating. Detection of copulation plug confirmed successful mating; the resulting embryos were then considered embryonic day (E) 0.5. Embryos were isolated in M2 medium (Millipore). Embryos were prepared for immunofluorescence as previously described (89). Primary antibodies used were: anti-NANOG (eBiosciences 14–5761, 1:100), anti-GATA6 (R&D, AF1700, 1:200). Nuclei were stained using DAPI or Hoechst (1:1000, Invitrogen). Embryos were mounted on microscopy slides with Vaseline bridges to prevent their crushing. Three independent immunofluorescence stainings, each with E3.5 and E4.5 embryos from 7 litters, were performed for the first wild-type data set.
Nanog mutant embryos were obtained as previously described [4 (link)] and genotyped by NANOG antibody staining.
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6

Immunocytochemical Analysis of Stem Cell Markers

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Cells for immunocytochemistry were grown on ibidi µ-slides and stained as described in Kalmar et al. (2009 (link)). Primary antibodies were anti-NANOG (1:200; eBiosciences, 14-5761), anti-FLAG (1:1000; Sigma M2, F3165), anti-GATA6 (1:200; R&D, AF1700) and anti-GATA4 (1:200; Santa Cruz, sc-9053). Detection was performed using Alexa Fluor-conjugated secondary antibodies at 4 μg/ml (Molecular Probes). Nuclei were visualized using Hoechst 33342 dye at 100 μg/ml (Molecular Probes, H1399). Cells were imaged on a Zeiss LSM700 confocal microscope with a 40× oil immersion lens (NA 1.3).
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7

Western Blot Analysis of GATA6 in EPS Cell Lines

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Whole-cell protein extracts were isolated from EPS-1, EPS-2, EPS-Gata6KO-1, and EPS-Gata6KO-2 cell line using RIPA lysis buffer (Beyotime, P0013B) supplemented with protease inhibitor cocktail (Roche, 04693132001). Protein extracts were loaded onto SDS-polyacrylamide gel. Gel was run at 80 V for 30 min and 120 V for 1.5 h. Proteins were transferred for 2 h at 200 mA to a PVDF membrane (IPVH00010, Millipore). Blots were incubated in rapid blocking buffer (Epizyme Biomedical Technology, PS108) for 30 min. Primary antibodies were incubated overnight at 4°C, and secondary antibodies were incubated at RT for 1 h. The signals were measured using ECL reagents (GE) and visualized by the ChemiDoc MP imaging system (Bio-Rad).
The primary antibodies and dilutions used were as follows: anti-GATA6 (1:400; R&D Systems, AF1700), anti-β-Actin (1:2,000; Proteintech, HRP-66009). The primary antibodies and dilutions used were as follows: anti-goat IgG (H+L) (1:5,000; Beyotime, A0181), anti-mouse IgG (H+L) (1:5,000; Beyotime, A0216).
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8

Immunostaining of α-SMA and GATA6

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Cells were fixed [15 (link)] and stained with unconjugated monoclonal anti-α-smooth muscle actin (α-SMA; Sigma-Aldrich; cat. number: A5228) or anti-GATA6 (R&D Systems Minneapolis, USA; cat. number: AF1700) primary antibody or the matched isotype control for 1 hour at room temperature in the dilution according to manufacturer's instructions. AlexaFluor488 (α-SMA) or AlexaFluor568 (GATA6) secondary antibodies were applied for fluorescent detection, and nuclei were counterstained with DAPI. The fluorescence membrane stain DiSC3(5) was used in final concentration of 5 μM.
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9

Preimplantation Embryos Immunofluorescence

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After 3.5 days of embryonic development, females were killed by cervical dislocation and preimplantation embryos were flushed from dissected uteri in M2 medium (Embryomax®; Millipore, Ref. MR-015-D, Burlington, MA, EE. UU) and prepared for immunofluorescence as previously described (Nichols et al., 2009) .
Primary antibodies were anti-NANOG raised in rat (eBioscience, San Diego, CA, USA, Ref. 14-5761; 1:200) , anti-GATA6 raised in goat (R&D Systems, Minneapolis, MN, USA, AF1700; 1:200), anti-GATA4 raised in rabbit (Santa Cruz, Dallas, TX, USA, sc-9053; 1:200) and anti-GATA3 raised in rabbit (eBioscience, San Diego, CA, USA, Ref. 1:200) . DAPI (Invitrogen/Thermo Fisher Scientific, Waltham, MA, USA, D1306; 1:1000) was used to stain the nuclei.
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10

Immunostaining of Adherent Cells

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Immunostaining of adherent cells was performed as previously described (Schröter et al., 2015) (link).
Antibodies used were anti-NANOG (e-bioscience, eBioMLC-51, 14-5761-80, final concentration 2.5 µg/ml), anti-GATA6 (R&D AF1700, final concentration 1 µg/ml), and anti-FLAG (Sigma-Aldrich F1804-200, final concentration 1 µg/ml). Secondary antibodies were from Invitrogen/LifeTech. Images were acquired using a 63x 1.4 N.A. oil-immersion objective on a confocal Leica SP8 microscope, with all settings held constant between replicates. Images were quantified using custom scripts written for ImageJ (NIH) and in Matlab (The Mathworks).
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