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Anti phospho fak tyr 397

Manufactured by Cell Signaling Technology
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Anti-phospho-FAK (Tyr 397) is a primary antibody that recognizes the autophosphorylation site of Focal Adhesion Kinase (FAK) at tyrosine 397. It is used to detect and quantify the levels of FAK phosphorylation at this specific residue.

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9 protocols using anti phospho fak tyr 397

1

Apoptosis Regulation by PFK15 Compound

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PFK15 (1-(4-pyridinyl)-3-(2-quinolinyl)-2-Propen-1-one) was purchased from Selleckchem (Houston, USA). Anti-E2F-1, anti-CDK (cyclin dependent kinase) 4 (DCS156), anti-cyclin E1 (HE12), anti-CDK6 (DSS83), anti-Rb (4H1), anti-CDK2 (78B2), anti-cyclin D1 (DCS6), anti-Bcl-2, anti-Bax (D2E11), anti-caspase 9 (C9), anti-caspase 8 (D35G2), anti-caspase 3 (8G10), anti-cleaved caspase-3 (Asp175), anti-FAK, anti-phospho-FAK (Tyr 397) and anti-β-actin antibodies were obtained from Cell Signaling Technology (Beverly, MA), anti-phospho-cadherin E and anti-Rb (phosphor S807) antibody purchased from Abcam (Abcam, MA).
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2

Signaling Pathways in Rheumatoid Arthritis

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Due to unique cellular responses observed in HFLS-RA cells (compared to HFLS-OA or HFLS control cells), cell signaling pathways were examined only in HFLS-RA cells. Several signal transduction pathways involved in the transformation of HFLS-RA cells to an aggressive phenotype were examined (16 (link), 50 (link), 59 (link)). Briefly, HFLS cells were incubated with antigens for 15-min, 30-min, 1-h and 4-h, cellular lysates were prepared as above, and the following primary antibodies (all polyclonal rabbit IgGs) were utilized to probe the samples; anti-β-actin antibody (endogenous control) (Novus Biologicals), anti-SAPK/JNK (#9252), anti-phospho-SAPK/JNK (Thr183/Tyr185) (#9251), anti-Erk1/2 (p44/42 MAPK) (#9102), anti-phospho-Erk1/2 (p44/42 MAPK; Thr202/Tyr204) (#9101), anti-Akt (#9272), anti-phospho-Akt (Ser473) (#9271), anti-p38 MAPK (#9212), anti-phospho-p38 MAPK (Thr180/Tyr182) (#4511), anti-Paxillin (#2542), anti-phospho-Paxillin (Tyr118) (#2541), anti-FAK (#3285), anti-phospho-FAK (Tyr397) (#3283) (Cell Signaling Technology, Danvers, MA, USA). HRP-conjugated anti-rabbit IgG (Jackson ImmunoResearch) was used as a secondary antibody. Respective band intensities were measured and reported as outlined above. The maximum and minimum activation of signaling pathways for HFLS lysates was determined based on positive (treatment with LPS) and negative (treatment with media) controls.
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3

Western Blot Analysis of Focal Adhesion Signaling

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SCs were washed twice with cold PBS and incubated in a lysis buffer (RIPA, BioTeke, Beijing, China) containing 1 mmol/L protease inhibitor PMSF (Sigma, St. Louis, MO, USA) and phosphatase inhibitors (Invitrogen, Carlsbad, CA, USA) on ice, followed by centrifugation at 12,000 g and 4°C for 15 min. Protein concentration was determined using a Micro BCA Protein Assay Kit (Thermo Fisher Scientific, Rockford, USA). Protein samples (15 μg) were loaded onto a 10% polyacrylamide gel and transferred onto PVDF membranes using semidry methodology, as previously described [36 (link)]. Membranes were probed using specific antibodies: anti-FAK (#3285), anti-phospho-FAK (Tyr397; #8556), anti-paxillin (#3283), anti-phospho-paxillin (Tyr118; #2541), anti-Akt (#9272) or anti-phospho-Akt (Ser473; #9271), which were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-β-actin (AP0060), anti-rabbit IgG (BS13278) and anti-mouse IgG (BS30503) were obtained from Bioworld Technology (Louis Park, MN, USA). The proteins were visualized with the ECL-Plus Western blotting reagent in a FluorChem M system (Cell BioSciences, San Leandro, CA, USA). Band density was analyzed by Image J (http://rsb.info.nih.gov/ij/).
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4

Quantification of Activated RhoA Proteins

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After control and transfected cells were incubated at 37°C in a CO2 incubator for the indicated times, total proteins were extracted from the cells. Additionally, the membrane fraction of RhoA was isolated by RhoA Western blot using a ProteoExtract Subcellular Proteome Extraction Kit Mini (Calbiochem, San Diego, CA, USA) using the manufacturer’s recommended protocol because the membrane fraction of RhoA contained most of the activated RhoA proteins. Equal amounts of the protein extracts were separated on SDS-polyacrylamide gels, transferred to polyvinylidene difluoride membranes, and incubated overnight with primary antibodies. The primary antibodies used were anti-EphA2 (1:1,000; Santa Cruz Biotechnology, Santa Cruz, CA, USA) or anti-FAK (1:2,000; Cell Signaling Technology, Danvers, MA, USA) or anti-phospho-FAK (Tyr397, 1:1,000, Cell Signaling Technology) or anti-RhoA (1:2000, Santa Cruz Biotechnology). The results were quantified by densitometry and normalized by β-actin expression.
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5

Protein Expression and Signaling Analysis

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Whole cell lysates were prepared in M-PER buffer (Thermo, Waltham, MA), resolved by SDS-PAGE and blotted with indicated antibodies. The following antibodies were used in this study: Anti-HA, anti-FLAG, anti-phospho-β-catenin (Ser33/37/Thr41), anti-β-catenin, anti-GSK3α, anti-β-TrCP, anti-α-Tubulin, anti-GSK3β, anti-FAK, anti-phospho-FAK (Tyr397), anti-PYK2 and anti-phospho-PYK2 (Tyr402) (Cell Signaling); anti-FLAG M2 (Sigma); anti-ubiquitin and anti-β-catenin (BD Bioscience, San Jose, CA); anti-GSK3, anti-c-Myc, anti-PYK2, anti-β-TrCP, anti-phospho-GSK3β (Tyr216) and anti-β-Actin (Santa Cruz Biotechnology, Dallas, TX); anti-phospho-GSK3 (Tyr279/Tyr216) (Millipore). anti-GSK3β for IP was purchased from Abcam (Cambridge, MA) and Bethyl Laboratories (Montgomery, TX). SuperSignal West Pico Chemiluminescent Substrate and SuperSignal Western Blot Enhancer (Thermo) were used to enhance western signal when needed. PF-562271 was purchase from MedKoo Biosciences (Chapel Hill, NC) and Selleck Chemicals (Houston, TX). Gelucire is a gift from Gelucire-4414.html">Gattefosse (Paramus, NJ). MG-132 was obtained from Sigma.
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6

Protein Expression Analysis of Signaling Pathways

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Whole cell lysates were prepared in lysis buffer (20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP40 and 10% Glycerol), resolved by SDS-PAGE and blotted with indicated antibodies. The following antibodies were used in this study: Anti-β-catenin, anti-FAK, anti-phospho-FAK (Tyr397), anti-ERK1/2, anti-SRC and anti-Integrin β1 (Cell Signaling Technology, Danvers, MA); anti-GSK3α/β, anti-phospho-GSK3α/β (Tyr279/216), anti-phospho-ERK1/2, anti-β-Actin and anti-SP1 (Santa Cruz Biotechnology, Dallas, TX). SuperSignal West Pico Chemiluminescent Substrate and SuperSignal Western Blot Enhancer (Thermo Fisher Scientific, Waltham, MA) were used to enhance western signal when needed. Vemurafenib, Dabrafenib, GDC-0879 (8 (link)), Erlotinib, SCH772984 (9 (link)), LY3009120 (10 (link)) and ICG-001(11 (link)) were purchased from Selleck Chemicals (Houston, TX). PF-562271 (12 (link)) was purchased from MedKoo Biosciences (Chapel Hill, NC). PLX7904 (13 (link)) was obtained from Plexxikon (Berkeley, CA). Gelucire is a gift from Gattefosse (Paramus, NJ). NE-PER Nuclear and Cytoplasmic Extraction Reagents from Thermo Fisher Scientific were used for subcellular fractionation according to manufacturer’s protocol.
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7

Integrin-Mediated Signaling Pathway Analysis

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Culture reagents and molecular biology products were purchased from Invitrogen (distributed by Fischer Scientific, Illkirch, France). RIPA lysis buffer, Bovine Serum Albumin, Gelatin, Matrigel and RGDS peptide were purchased from Sigma (St-Quentin, France). The anti-αvβ3 integrin antibody (23C6) was purchased from Millipore (Saint Quentin-en-Yvelines, France) and the corresponding IgG1, k control isotype (MOPC-21) was from Sigma-Aldrich. Anti-phospho-FAK (Tyr397) (dilution 1/3000), anti-FAK (dilution 1/3000), anti-phospho-PI3K p85 (Tyr458)/p55 (Tyr199) (dilution 1/1000) antibodies were purchased from Cell Signaling (distributed by Ozyme, Saint Quentin-en-Yvelines, France). Anti-phospho-Akt (Tyr308) (dilution 1/3000) and Anti-Akt antibodies (dilution 1/3000) were purchased from Cell Signaling Technology (distributed by Ozyme, Saint Quentin en Yvelines, France). The anti-PI3K p85 antibody (dilution 1/2000) was purchased from Merck Millipore (Molsheim, France). The anti-actin antibody (dilution 1/10000) was purchased from Santa Cruz Biotechnology (distributed by Clinisciences, Nanterre, France). CS-50 (CHFFANKYSFWLTTVKADLQFSSAPAPDTLKESQAQRQKISRCQVCVKYS) and QS-13 (QKISRCQVCVKYS) peptides were purchased from Proteogenix (Schiltigheim, France) and used at 40 µM.
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8

Sorafenib Signaling Pathway Assay

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NSK-01105 (Patent No. CN 2009 1 0026748.8) was synthesized by Nanjing Luye Sike Pharmaceuticals. Sorafenib was purchased from Bayer Pharmaceuticals (West Haven, CT). Compounds were dissolved in DMSO and diluted with RPMI1640 medium to the desired concentrations. VEGF was purchased from Cell Signaling Technology (Beverly, MA). Anti-phospho-VEGFR-2 (Tyr 1059), anti-phospho-EGFR (Tyr 1068) and anti-phospho-FAK (Tyr 397) antibodies were obtained from Cell Signaling Technology (Beverly, MA), and anti-phospho-eNOS (Ser 1177) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA).
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9

Immunofluorescence and Immunoblot Analysis

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Colon samples for immunofluorescence were swiss-rolled and fixed in 10% formalin and then processed and embedded in paraffin. 5-micron sections were cut and underwent a deparaffination process followed by a citrate antigen retrieval step before being permeabilized in 0.5% triton-X 100 in PBS and blocked with 5% normal goat serum. Primary antibodies include, from Cell Signaling Technology (Danvers, MA), anti-Phospho-p44/42 MAPK cat#4370, anti-phospho-FAK (Tyr397) cat#3283. Samples were incubated in primary antibody overnight at 4ºC. Samples were then washed three times and incubated for 1 hour in fluorochrome-conjugated secondary antibody. Samples were again washed and incubated with DAPI at a concentration of 1:10000 in PBS for 5 minutes. Samples were mounted using Prolong diamond antifade and imaged on an Olympus FV1000 confocal microscope at 20X. At least 3 sections and three different images were taken for each sample. For immunoblot analysis, immunoreactive species were detected using the aforementioned anti-Phospho-p44/42 MAPK cat#4370, anti-phospho-FAK (Tyr397) cat#3283, followed by anti-rabbit HRP or anti-mouse HRP followed by visualization with ECL chemiluminescence detection reagent (GE Healthcare Biosciences Piscataway NJ). Experiments were conducted in triplicate and the average density of the band quantified using ImageJ software.
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