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6 protocols using protein assay kit

1

Yeast Hog1 and Slt2 Phosphorylation Analysis

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To investigate the phosphorylation levels of Hog1 and Slt2, yeast cells expressing Hog1-HA and Slt2-HA fusion proteins were first grown overnight in SC medium at 30 °C. Cells were then cultured in fresh SC medium to an OD600 of 0.8–1.0, and treated with 50 µM CdCl2 or 1 µg/mL TM for an additional 2 h. To prepare protein extracts, cell cultures were first cooled in ice water for 10 min and cells were harvested by centrifugation at 4 °C, then washed once with ice-cold water. Next, cells were resuspended in ice-cold lysis buffer [23 (link)] and vortexed with glass beads 10 times for 1 min each time. The lytic samples were centrifuged at 12,000 rpm for 10 min at 4 °C. Protein concentration was measured using a protein assay kit (Sangon Biotech, Shanghai, China) before samples were boiled with sample buffer (250 mM Tris-HCl pH 6.8, 10% sodium dodecyl sulphate (SDS), 0.05% Bromophenol Blue, 50% glycerol, 7.5% DTT) for 5 min.
To perform the Western blotting assay, samples were first analysed by 10% SDS-PAGE and transformed onto nitrocellulose membranes. Phosphorylation of Hog1-HA or Slt2-HA protein was immunodetected by phospho-p38 MAPK or phospho-p44/42 MAPK antibody (New England Biolabs, Beverly, MA, USA), respectively. Expression of Hog1-HA and Slt2-HA fusion proteins was detected by HA monoclonal antibody (Sangon Biotech).
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2

Protein Extraction and MPO Quantification

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The protein was extracted by RIPA cell lysate (containing PMSF; Thermo Fisher Scientific, Inc., Waltham, MA, USA). Protein concentration was detected using a modified bicinchoninic acid method with a commercially available protein assay kit (Sangon Biotech Co., Ltd., Shanghai, China), according to the manufacturer's instructions. An MPO detection kit (A044; Nanjing Jiancheng Biochemical Engineering Research Institute, Nanjing, China) was used to determine MPO activity following the instruction of the kit, using an Evolution 201 UV-Visible spectrophotometer (Thermo Fisher Scientific, Inc.).
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3

Cloning and Expression of AjCTRP9 Protein

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The partial cDNA sequence of AjCTRP9 was cloned with specific primers (Table S1 in Supplementary Material) then double digested with EcoRI and NotI and ligated into the vector pGEX-4T-2 (GE, USA). Ajβ-actin was used as a control, as described in our previous work (38 (link)). The recombinant plasmid (pGEX-4T-2-AjCTRP9) was transformed into Escherichia coli cells of Transetta (DE3) (TransGen, China), and the DNA was sequenced to ensure correct orientation. The positive transformants were subsequently incubated in LB medium containing 50 μg mL−1 of ampicillin at 37°C and 200 rpm. Then, the expression of the GST-tagged fusion protein was induced in pGEX-4T-2-AjCTRP9 with 1 mM isopropyl-b-d-thiogalactopyranoside (IPTG) at 37°C for 4 h, and the protein was collected after cells were disrupted with ultrasonic waves. The GST-Sefinose™ Resin was used for the purification, according to the manufacturer’s protocol (Sangon, China). The concentration of the purified soluble protein was quantified with a Protein Assay Kit (Sangon, China). The soluble target protein, after dialysis, was injected into a 4-week-old mouse to acquire polyclonal antibody according to a previously described protocol (38 (link)).
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4

Antioxidant Enzyme Assay in Cadmium-Exposed Acarid

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The samples of A. ovatus required from different Cd treatment groups were 1000 eggs (within 24 h), 800 larvas (the first instar), 600 protonymphs (the first instar), 400 tritonymphs (the first instar), 200 female adults (2 days) and 200 male adults (2 days), respectively. Samples were collected separately in 1.5 mL centrifuge tubes and stored in a refrigerator at −80 ℃ for later use. The protein content of each sample was determined by Protein Assay Kit (Sangon, C503031). All the samples were weighed and homogenized. The test products were obtained by centrifugation (Eppendorf 5417R, 9391 g, 4 °C, 5 min) before determining protein content. The activity of SOD, POD, CAT and GST were separately determined using the Superoxide Dismutase Activity Assay Kit (Micromethod, D799594), Peroxidase Activity Assay Kit (Micromethod, D799592), Catalase Activity Assay Kit (Micromethod, D799598) and Glutathione S-transferase Activity Assay Kit (Micromethod, D799612) following the instructions. All the assay kits were purchased from Sangon Biotech (Shanghai, China). The experiments were performed in three triplicates.
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5

Depletion and iTRAQ-based Proteomic Analysis

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Equal amounts of 5 samples from one group were pooled as one serum sample. According to manufacturer instructions, three pooled samples (Mild, Severe, Control) were treated with a ProteoPrep Blue Albumin and immunoglobulin G (IgG) Depletion kit (Sigma Aldrich, St. Louis, MO, USA) to remove albumin and IgG and protein concentration was measured by by Protein Assay kit (Sangon Biotech Co., Ltd. Shanghai, China).100 μg total protein per sample which was alkylated and subjected to tryptic hydrolysis was reduced. According to iTRAQ Reagents (AB Sciex, Framingham, MA, USA) manufacturer's protocol, every sample was labeled with the iTRAQ tags as follows: Mild group (116 tags), Severe group (118 tags), and Control group (114 tags). All the labeled peptides were pooled together and evaporated to dryness in a vacuum centrifuge, and then analyzed by iTRAQ-based liquid chromatography-mass spectrometry/mass spectrometry (LC-MS/MS).
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6

Protein Expression Analysis in Cultured Cells

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Total proteins were extracted from cultured cells using mammalian cell total protein lysis buffer (Sangon Biotech, Shanghai, China) following the manufacturer’s instructions. After protein concentration quantitation using the BCA (bicinchoninic acid) protein assay kit (Sangon Biotech, Shanghai, China), proteins were separated by SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). Following blocking with 5% BSA solution for 2 h at room temperature, membranes with proteins were incubated with primary and secondary antibodies and finally developed with the Pierce enhanced chemiluminescence (ECL) western blotting substrates (Thermo Fisher Scientific, Madison, WI, USA). Primary antibodies used for western blotting were as follows: anti-E-cadherin (#ab15148; ABCAm), anti-N-cadherin (#ab18203; ABCAm, Cambridge, UK), anti-vimentin (#5741; CST, Framingham, MA, USA), anti-MMP-2 (#ab37150; ABCAm), anti-Slug (#ab27568; ABCAm), anti-CXCR4 (#97680; CST), anti-BCL-XL/S (#ab32370; ABCAm), and anti-GAPDH (glyceraldehyde-3-phosphate dehydrogenase, #5174; CST). Secondary antibodies targeting rabbit IgG (#ab205718; ABCAm) were used in this study. Relative protein levels were determined by band intensities quantitated with the ImageJ software and normalized to GAPDH levels.
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