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18 protocols using barbituric acid

1

Metabolic Profiling of Peach Extracts

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(–)-Cotinine, 1-hydroxypyrene, nicotine hydrogen bitartrate, sodium acetate, potassium cyanide, chloramine, barbituric acid, and β-glucuronidase/arylsulfatase were obtained from Sigma-Aldrich (St. Louis, MO, USA). Methanol was purchased from Merck (Darmstadt, Germany). All reagents used in this study were of analytical grade. The white-fleshed fruits of Prunus persica (L.) Batsch (Family Rosaceae; peaches) were purchased at the Kyeonggi Dong-Boo Fruit Agriculture Co. (Incheon, Korea), where a voucher specimen (PE20060801) has been deposited.
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2

Synthesis of Catechin Cocrystals

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(−)-Epicatechin
of ≥90% and (+)-catechin hydrate of ≥96% purities were
purchased from Sigma-Aldrich (Saint Louis, MO) and recrystallized
from ethanol. Barbituric acid, 5-methylo-1H-benzotriazole,
4-(methyloamino)-pyridine, 5-methylbenzimidazole, acetamide, salicylamide,
niacinamide, isonicotinamide, caffeine, glutarimide, and the solvents
purchased from Sigma-Aldrich were of analytical grade.
The cocrystal
synthesis: Catechins and the BTA coformer in 1:1 and 2:1 molar ratios
were dissolved in ethanol at 30 °C. Colorless crystals were obtained
by slow evaporation of the solvent. The procedure lasted for 2 days
at room temperature. Crystals were collected from the crystallization
vessels.
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3

Silicium Organique G5 Cytotoxicity Assay

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Silicium organique G5 “TM” was purchased from Glycan Group (Geneva Switzerland). Dulbecco’s modified Eagle’s medium (DMEM), foetal bovine serum (FBS), 0.25% trypsin-EDTA, and penicillin/streptomycin mixture were obtained from GIBCO–BRL (Grand Island, NY, USA). Hydrogen peroxide (H2O2), 3-(4,5-dimethyl thiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT), Ac-DEVD-AMC-[N-acetyl-Asp-Glu-Val-Asp-(7-amino-4-methyl-coumarin)], Ac-LETD-AFC-[Leu-Glu-Thr-Asp-(7-amino-4-trifluoromethyl-coumarin)], Ac-LEHD-AFC-[Leu-Glu-His-Asp-(7-amino-4-trifluoromethyl-coumarin)], barbituric acid, butylated hydroxytoluene (BHT),2,7-dichlorodihydrofluorescein diacetate (H2DCF-DA), dimethyl sulfoxide (DMSO), DL-Dithiothreitol (DTT) and 1,1,3,3-tetramethoxypropane were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Other chemicals were reactive grade products from Merck (Darmstadt, Germany).
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4

Quantitative Analysis of Cyanogenic Glycosides

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Standards of linamarin (98%) and lotaustralin (97%) were obtained from TRC (Toronto, Canada). Cyanogen in water (GBW(E) 080115) at 50 µg/mL was produced by the Chinese Academy of Metrology. Acetonitrile and methanol (HPLC grade) were from Sigma-Aldrich (Steinheim, Germany). Chloramine-T, isonicotinic acid, barbituric acid and β-glucosidase were obtained from Sigma-Aldrich (Shanghai, China). All other reagents including sodium hydroxide, monopotassium phosphate, disodium hydrogen phosphate were of analytical grade purchased from Sinopharm Co., Ltd. (Shanghai, China). Ultrapure water used in the experiments was prepared by Milli-Q purification system (Millipore, Bedford, USA).
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5

Synthesis of Heterocyclic Compounds via Multicomponent Reactions

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The nitroketene dithioacetals, cysteamine hydrochloride, isatin, malononitrile, ethyl cyanoacetate, methyl cyanoacetate, cyanoacetohydrazide, barbituric acid, derivatives of isatin, triethylamine and solvents were obtained from Sigma Aldrich and used without further purification. Nano-silica (CAB-O-SIL® M5) was obtained from Cabot Co. IR spectra: Bruker Tensor 27 spectrometer. NMR spectra: Bruker DRX-300 Avance instrument (300 MHz for 1H and 75.4 MHz for 13C) with DMSO-d6 as solvents. Chemical shifts are expressed in parts per million (ppm), and coupling constant (J) are reported in hertz (Hz). Mass spectra: Agilent 5975C VL MSD with Triple-Axis detector operating at an ionization potential of 70 eV. Elemental analyses for C, H and N: Heraeus CHNO-Rapid analyzer. Melting points: electrothermal 9100 apparatus.
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6

Synthesis of Pyridine-based Compounds

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Silver nitrate, cobalt(II) nitrate, dimethylformamide, 2,6-pyridinedicarboxylic acid, ethanol, sodium hydroxide, Hydrazine hydrate, ethyl acetoacetate, aryl aldehydes, and barbituric acid derivatives were purchased from Sigma-Aldrich. The chemicals were used without further purification.
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7

Synthesis and Purification of Ribonucleotides

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Trimethylsilyl trifluoromethanesulfonate, O-bis(trimethylsilyl)acetamide, Barbituric acid, 1-O-acetyl-2,3,5-tri-O-benzoyl-beta-d-ribofuranose, Sodium methoxide, and DOWEX 50 × 8 H+ resin were all procured from Sigma-Aldrich. DNA oligonucleotides
were purchased from Eurofins, Inc. and were used without further purification.
T7 RNA polymerase, ribonuclease inhibitor (RiboLock), NTPs, RNase
A, and RNase T1 were obtained from Fermentas Life Science. Calf intestinal
alkaline phosphatase (CIP) and snake venom phosphodiesterase I were
procured from Invitrogen (ThermoFisher Scientific) and Sigma-Aldrich,
respectively. Chemicals for preparing buffer solutions were purchased
from Sigma-Aldrich (BioUltra grade). Autoclaved water was used in
all the biochemical reactions, and for HPLC analyses, HPLC grade solvents
were used.
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8

Creatine and Barbituric Acid Phantom Preparation

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A dual 3% gel phantom with 50 mM creatine, and barbituric acid (Sigma-Aldrich Co. St. Louis, MO. USA) was prepared for this study. These two molecules, with chemical shifts of 2 and 5 ppm, respectively, relative to the water proton resonance at 0 ppm, were used to model a small chemical shift case. To prepare the phantom, the agarose solution was first heated to boiling and then cooled under room temperature till 70 °C. Then the contrast agent was added in and mixed properly. The pH value of each sample was adjusted by phosphate buffer. The pH value of creatine and barbituric acid solutions were respectively titrated to 6.98 and 7.10 monitored by an electronic pH-meter (SUNTEX Instruments, Taiwan). Proper pH value was used to achieve adequate CEST contrast. After titrating process was finished, these two samples were quickly transferred to two 6 mL glass test tubes each. The two glass tubes were then placed in a 50 mL centrifuge tube. The centrifuge tube was filled with pure 3% agarose solution in the outer compartment. The phantom was then left to solidify under room temperature before the experiment was conducted.
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9

Chemical Standards for Cell Culture Analysis

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Standards of nicotine, cotinine, chlorogenic acid, sodium acetate, potassium cyanide, chloramine T, barbituric acid, sodium metabisulfite, and acetone were purchased from Sigma-Aldrich (St. Louis, MO, USA). All chemicals were of analytical grade. F/12 medium was obtained from the American Type Culture Collection (ATCC, Manassas, VA). Dulbecco's modified eagle's medium (DMEM) and fetal bovine serum (FBS) were purchased from Cellgro (Manassas, VA). Penicillin/streptomycin was obtained from Gibco (Introgen Corporation, Grand Island, NY).
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10

Synthesis of Urea-Barbituric Acid Crystals

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Materials: Urea and barbituric acid were purchased from Sigma Aldrich (Steinheim, Germany) and carbamazepine was purchased from Molekula (Darlington, UK). All reagents were used without further purification. Laboratory grade solvents (methanol and ethanol) purchased from Sigma Aldrich were used for all crystallizations.
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