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49 protocols using 12 channel head matrix coil

1

Multimodal MRI protocol for brain imaging

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Data acquisition was performed in a 3 Tesla Siemens Magneton Trio scanner with a 12-channel head matrix coil. Each session started with a T1-weighted 3D anatomical MPRAGE (rapid gradient-echo) sequence, using a voxel resolution of 1.0 x 1.0 x 1.0 mm. Repetition time (TR) was set at 2530 ms, echo time (TE) at 3.42 and had a field of view (FOV) of 256 x 256 mm. Each MPRAGE sequence comprised 176 slices, a flip angle of 7º and an inversion time of 1100 ms. T2*-weighted 2D echo-planar images were obtained in 2 functional runs, lasting for ∼9 min. Acquisition parameters for the functional runs were: TR = 2000 ms, TE = 30 ms, voxel size = 2.5 x 2.5 x 3 mm, FOV = 256 x 256 mm, matrix size = 102 x 102 and a flip angle of 90°. Each functional localizer sequence comprised 31 slices and had 276 volumes.
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2

Structural MRI of Brain Regions

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All MRI scans were performed on a Siemens 3T Trio MRI scanner with a Siemens 12 channel head matrix coil. Anatomical T1-weighted images were acquired using a 3D magnetization-prepared rapid gradient echo (MPRAGE) sequence. (TR=2300 ms, TE=2.98 ms, TI=900 ms, acquisition matrix: 256×240×160 coronal slices, field of view: 240×256×160 mm3, flip angle=9°, acquisition time=5 min 10 sec).
MPRAGE images were used for region of interest segmentation (see MRI image processing). Regions of interest included the bilateral amygdalae, hippocampi, orbitofrontal cortices, and temporal poles. White and gray matter segmentations in the orbitofrontal cortices and temporal poles were pooled together into combined regions of interest.
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3

Structural and Functional Brain Imaging

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Participants were scanned on a Siemens Tim Trio 3.0 Tesla MAGNETOM scanner (Siemens Medical Solutions, Erlangen, Germany) with a Siemens 12-channel Head Matrix Coil. A high-resolution T1-weighted MPRAGE structural image (resolution = 1 × 1 × 1 mm) was acquired for each participant. Functional images were acquired using a BOLD contrast-sensitive echo-planar sequence (TE = 27 ms, flip angle = 90°, in-plane resolution 4 × 4 mm; volume TR = 2.5 s). Whole-brain coverage was obtained with 32 contiguous interleaved 4 mm axial slices. Participants completed seven 6-minute 50-second long BOLD runs.
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4

High-Resolution Brain Imaging and Resting-State Functional MRI

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Imaging was performed on a MAGNETOM Trio Tim 3.0T Scanner (Erlangen, Germany) with a Siemens 12 channel Head Matrix Coil. Four T1-weighted images (sagittal, 224 slices, 0.8mm isotropic resolution, TE=3.74ms, TR=2400ms, TI=1000ms, flip angle=8°) and four high-resolution T2-weighted images (sagittal, 224 slices, 0.8 mm isotropic resolution, TE=479ms, TR=3200ms) were obtained. Thirty contiguous minutes of resting state data were collected in ten separate sessions, each on a different day (total time = 300 minutes). The subject visually fixated on a white crosshair presented against a black background. Functional imaging was performed using a gradient-echo EPI sequence (TR=2.2s, TE=27ms, flip angle=90°, voxel size = 4×4×4 mm, 36 slices). In each session, a gradient echo field map sequence was acquired with the same prescription as the functional images.
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5

Multimodal MRI Acquisition for Cognitive Tasks

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All MRI data were acquired on a Siemens Trio with a 12-channel Head Matrix Coil (Siemens AG). Head motion was reduced by the use of foam pads around the subjects' heads. During Not-X CPT performance ∼380 T2* weighted, BOLD-sensitive volumes were acquired for each “run,” using an echo-planar imaging pulse sequence with TR of 2400 ms, TE of 35 ms, FOV of 244 mm, matrix of 80 × 80, slice thickness of 3 mm, and a total of 40 slices, giving an in-plane resolution of 3 × 3 mm. Slices were positioned transversal along the A–P axis. Before each “run,” 2 spin echo sequences (TR = 2010 ms, TE = 35 ms, FOV = 244 mm, slice thickness = 3 mm, and matrix 80 × 80, giving an in-plane resolution of 3 × 3 mm) with opposite phase encoding (A–P and P–A) were acquired for correction of static magnetic field-induced distortion (Holland et al. 2010 (link)). For anatomical reference, a T1-weighted 3D MPRAGE volume was acquired (TR = 2300 ms, TE = 30 ms, FOV = 256 mm, slice thickness = 1.2 mm, and matrix 256 × 256, giving an in-plane resolution of 1 × 1 mm).
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6

Functional Neuroimaging with 3T fMRI

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fMRI was performed using a 3T Verio scanner equipped with a 12-channel Head Matrix Coil (Siemens, Munich, Germany). Each session lasted 6.5 min and included a T2*-weight echo planar imaging pulse sequence using the following parameters: repetition time (TR) = 2,500 ms; echo time (TE) = 30 ms; flip angle = 80°; matrix size = 64 × 64; field of view = 192 × 192 mm; 39 ascending 3.2-mm thick slices with a 25% slice gap. After the functional images were acquired, a T1-weighted high-resolution anatomical image was obtained using a magnetisation-prepared rapid-acquisition gradient-echo sequence (TR = 2,250 ms; TE = 3.06 ms; flip angle = 20°; field of view = 256 × 256 mm; voxel size = 1 × 1 × 1 mm).
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7

Whole-Brain Neuroimaging Acquisition Protocol

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Whole-brain functional and anatomical images were acquired using a 3.0 Tesla Siemens MAGNETOM Trio MRI scanner with Syngo software and 12-channel Head Matrix coil. Functional images were acquired using a T2*-weighted gradient-echo echo planar imaging (EPI) pulse sequence with 30×4 mm axial slices, interleaved from bottom to top (interslice gap: 1 mm, TE: 30 ms., TR: 2000 ms., flip angle: 90o, FOV: 192×192 mm, in-plane matrix resolution: 64×64). High-resolution T1-weighted MP RAGE gradient-echo anatomical images were collected with 176×1 mm slices (TE: 2.52 ms., TR: 2020 ms., TI:1100 ms., FOV.: 250×250 mm, image matrix resolution: 256×256). Finally, a field map was acquired with 30×4 mm slices (TE: 4.92/7.38 ms., TR: 488 ms., FOV: 192×192 mm). The data are available upon request.
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8

Resting-state fMRI Acquisition and Preprocessing

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Data acquisition was performed on a Siemens MAGNETOM Tim Trio 3.0 Tesla scanner with a Siemens 12 channel head matrix coil (Erlangen, Germany) at Swinburne University of Technology, Australia. Padded foam cushions were used to minimize head movement throughout the scan. All participants were instructed to try to think about nothing in particular (i.e., a resting-state), remain awake, and fixate their gaze on a white crosshair displayed centrally on a black background.
A multiband echo-planar imaging sequence with an acceleration factor of 5 was used to acquire functional MRI data for 8 minutes 38 seconds, along the anterior commissure-posterior commissure (AC-PC) plane with A > P phase encode direction (voxel size = 2 × 2 x 2 mm; 65 slices; repetition time (TR) = 1020 ms; total volumes = 500, echo time (TE) = 30 ms; flip angle (FA) = 65°). A T1-weighted sagittal MPRAGE structural image (TR = 1900 ms, TE = 2.52 ms, FA = 9°, 176 slices; voxel size = 1 × 1 x 1 mm voxels) and T2-weighted image (TR = 3200 ms, TE = 402 ms, 176 slices; voxel size = 1 × 1 x 1 mm voxels) were also obtained for anatomical co-registration.
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9

BOLD fMRI Acquisition Protocol for Cognitive Tasks

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Scanning was performed on a 3T Siemens Trio scanner with a 12-channel head matrix coil (Siemens AG, Erlangen, Germany). Foam pads were used to minimize head motion. T2* weighted, BOLD sensitive images were acquired using an echo-planar imaging pulse sequence (repetition time 3,000 ms, echo time 35 ms, field of view 220 mm, slice thickness =2.8 mm, slice number =41, in-plane resolution 2.8×2.8 mm). Each functional run contained either 111 (n-back) or 152 volumes (PVSAT), with slices positioned parallel to the plane through the anterior and posterior commissures. For anatomical reference, one T1 weighted 3D volume was acquired (2,300 ms repetition time, 2.88 ms echo time, 900 ms inversion time, 9° flip angle, 526 mm field of view, 160 slices, 1.2 mm slice thickness, 1.0×1.0 mm in-plane resolution).
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10

Parametric Spatial Working Memory fMRI

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All scans were performed on a Siemens Trio with a 12-channel Head Matrix Coil (Siemens AG, Erlangen, Germany). Foam pads around the subjects' heads were used to reduce head motion. During the parametric spatial working memory task, T2*-weighted BOLD fMRI was acquired utilizing an echo-planar imaging pulse sequence (repetition time = 2400 ms, echo time = 35 ms, field of view = 244 mm, matrix = 80 × 80, slice thickness = 3 mm, number of slices = 40, giving an in-plane resolution of 3 × 3 mm). A T1-weighted three-dimensional magnetization-prepared rapid gradient-echo (MPRAGE) volume was acquired for anatomical reference.
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