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5 protocols using gapdh

1

Western Blot Analysis of Angiogenic Factors

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In order to investigate expression level of ERK3, TNF-α, VEGF-C and VEGFR-3, hLEC cells were collected and lysed by RIPA lysis buffer (Cell Signal Technology, Danvers, MA, USA) on ice according to the manufacturer’s instruction. Then, the total cellular proteins were subjected to SDS-PAGE (10%) for western analysis. After transferring to polyvinylidene difluoride (PVDF) membranes, blots were incubated with 5% BSA (Gibco, Rockville, MD, USA) in Tris buffered saline containing 0.5% Tween 20 for 60 min. Then incubated overnight at 4 °C on a rocker with the following primary antibodies: anti-ERK3 (SAB, #33914), anti-TNF-α (abcam, #ab6671), Anti-VEGF antibody (SAB, #41702) and VEGFR3 (SAB, #44895) antibody (1:1,000). Following washing three times with TBST for 5 min, membranes were incubated with horseradish peroxidase (HRP) conjugated goat anti-rabbit IgG polyclonal secondary antibody (1:3,000) (Beyotime, #A0216, Beijing, China) at room temperature for 1 h. Using Amersham’s ECL + plusTM Western blot system kit for color developing. Signals were detected with enhanced chemiluminescence, using GAPDH as the internal standard (Kodak, Rochester, NY, USA).
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2

Protein Expression Analysis in Cancer Cells

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Total protein from shPOLQ and shCtrl SK-HEP-1 and BEL-7404 cells were subjected to western blot analysis. Briefly, after bathed in boiling water for 10 min, the total cellular proteins were subjected to SDS-PAGE (10%). After transferring to polyvinylidene difluoride (PVDF) membranes, blots were incubated with 5% BSA (Gibco) in Tris-buffered saline containing 0.5% Tween 20 for 60 min and incubated overnight at 4 °C on a rocker with the following primary antibodies: anti-POLQ (biorbyt, # orb48495), anti-mTOR (abcam, # ab2732), anti-p-mTOR (abcam, # ab137133), anti-CCND1 (CST, # 2978), anti-Bcl-2 (abcam, # ab196495), anti-c-Myc (CST, # 5605) and anti-GAPDH (Bioworld, # AP0063). Following washing three times with TBST for 5 min, the plots were then incubated with horseradish peroxidase (HRP) conjugated goat anti-rabbit IgG polyclonal secondary antibody (1:3000, Beyotime, # A0216) at room temperature for 1 h. Amersham’s ECL + plusTM western blotting system kit was used for color developing. Signals were detected with enhanced chemiluminescence, using GAPDH as the internal standard (Kodak), and analyzed by ImageJ software.
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3

Nox4 Expression Regulation by H2O2 and BYHWD

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To determine the time-dependent effect of H2O2 on Nox4 protein expression in HUVECs, the cells were treated with H2O2 (400 μM) for different time intervals (30 min, 1, 2, or 4 h). To determine the BYHWD effects on H2O2-induced Nox4 protein expression, the cells were divided into control, H2O2 (400 μM), BYHWD (30 mg/ml), and H2O2 + BYHWD (10, 20 and 30 mg/ml) groups. The cells were pretreated with various known concentrations of BYHWD (i.e., 10, 20, or 30 mg/ml) for 6 h. Bicinchoninic acid (BCA) protein assay kits (Sigma, China) were used for the quantification of protein extracts. Proteins were separated in equal amounts (50 μg per lane) using gel electrophoresis technique on SDS-polyacrylamide (10%) gel and transferred to polyvinylidene difluoride Millipore membrane (Thermo Scientific, USA). Membranes were incubated overnight at 4°C in a ratio of 1 : 1000with goat anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH; Sigma) or primary goat anti-Nox4 (Abcam, USA) followed by incubation for 3 h at room temperature with secondary rabbit antibody conjugated to HRP (1 : 3000, Cell Signaling, USA). Then, employing higher chemiluminescence and X-ray film (Kodak, USA), the signals were visualized and data were presented as the ratio of Nox4 to GAPDH.
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4

Western Blot Analysis of Kidney Proteins

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The right kidneys of the rat models were maintained for western blotting analysis. Briefly, the frozen renal tissue samples were cut into pieces and lysed with RIPA lysis buffer (AR0105, Boster, Wuhan, China) for one hour on ice, and the lysates were centrifuged at 14,000 g for 10 min. Mixed with loading buffer, the protein samples were subjected to SDS-PAGE and transferred onto nitrocellulose membranes by electrophoresis, while aliquots of the coped samples were used to determine the protein concentrations of each sample with a BCA kit (KGPBCA, KeyGEN Biotech, Nanjing, China).The transferred membranes were subsequently blocked and incubated overnight at 4 °C with the following primary antibodies: anti-Akt (1:500), anti-Bad (1:1000), anti-Bcl-xL (1:800), anti-Cytochrome C (1:1000) (all from Santa Cruz, CA, USA), anti-p-Akt (1:500), anti-p-Bad (1:1000), anti-Cleaved Caspase-9 and anti-Cleaved Caspase-3 (all from Cell Signaling Technology, Boston, USA). GAPDH (Santa Cruz, CA, USA) was blotted on the same membranes as a control. Blot bands were detected with SuperSignal® West Dura Extended Duration Substrate (Pierce, Rockford, IL, USA) and X-ray Film (Kodak, Rochester, NY, USA) and were then analysed with Bandscan 5.0 software and compared with GAPDH.
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5

Quantifying Protein Expression in SK-HEP-1 and BEL-7404 Cells

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Sample protein from shPOLQ and shCrol SK-HEP-1 and BEL-7404 cells were subjected to western blot analysis. Brie y, after bathed in boiling water for 10 min, the total cellular proteins were subjected to SDS-PAGE (10%). After transferring to polyvinylidene di uoride (PVDF) membranes, blots were incubated with 5% BSA (Gibco) in Trisbuffered saline containing 0.5% Tween 20 for 60 min and incubated overnight at 4°C on a rocker with the following primary antibodies: anti-POLQ (biorbyt, # orb48495), anti-mTOR (abcam, # ab2732), anti-p-mTOR (abcam, # ab137133), anti-CCND1 (CST, # 2978), anti-Bcl-2 (abcam, # ab196495), anti-c-Myc (CST, # 5605) and anti-GAPDH (Bioworld, # AP0063). Following washing three times with TBST for 5 min, the plots were then incubated with horseradish peroxidase (HRP) conjugated goat anti-rabbit IgG polyclonal secondary antibody (1:3000, Beyotime, # A0216) at room temperature for 1 h. Amersham's ECL + plusTM western blotting system kit was used for color developing. Signals were detected with enhanced chemiluminescence, using GAPDH as the internal standard (Kodak), and analyzed by ImageJ software.
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