The largest database of trusted experimental protocols

Thermo high resolution q exactive focus mass spectrometer

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The Thermo high resolution Q-Exactive focus mass spectrometer is a high-performance liquid chromatography-mass spectrometry (LC-MS) instrument. It is designed to provide accurate, high-resolution mass analysis of a wide range of analytes. The core function of the Q-Exactive focus is to ionize, separate, and detect molecules based on their mass-to-charge ratio, enabling precise identification and quantification.

Automatically generated - may contain errors

6 protocols using thermo high resolution q exactive focus mass spectrometer

1

Quantitative Metabolite Profiling by UHPLC-Q-Exactive

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Thermo Scientific Dionex Ultimate 3000 UHPLC system, hyphenated with a Thermo high resolution Q-Exactive focus mass spectrometer (Thermo, Bremen, Germany) was used for the analysis. The chromatographic system was coupled to the MS with a heated electrospray ionization source II (HESI II). Nitrogen (purity > 99.999%) obtained from a Genius NM32LA nitrogen generator (Peak Scientific, Billerica, MA, USA) was employed to produce MS fragmentation. Mass calibration for the Orbitrap spectrometer and HESI parameters were explained in detail and precisely in previous reports [5 (link),24 (link)].
Solvent delivery was performed at 1 mL/min using ultrapure water supplemented with 1% formic acid (A) and acetonitrile with 1% acid formic (B) and a program starting with 5% B at zero time, then maintained 5% B for 5 min, then changing to 30% B within 10 min, then maintaining 30% B for 15 min, then going to 70% B for 5 min, then maintaining 70% B for 10 min, and finally returning to 5% B in 10 min and keeping this condition for twelve additional minutes to achieve column stabilization before the next injection of 20 µL [5 (link),24 (link)].
+ Open protocol
+ Expand
2

Spectroscopic Characterization of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Optical rotation was measured with a Jasco DIP-370 digital polarimeter (Tokyo, Japan). Ultraviolet (UV) spectra were recorded on a Shimadzu UV-2401PC spectrophotometer (Kyoto, Japan). Nuclear magnetic resonance (NMR) spectra were measured on an Avance III-600 spectrometer (Bruker Biospin, Rheinstetten, Germany). Electrospray ionization mass spectrometry (ESI–MS) spectra were recorded on a Thermo high-resolution Q Exactive Focus mass spectrometer (Thermo, Bremen, Germany). Column chromatography was performed on silica gel G (200–300 mesh, Qingdao Marine Chemical Inc., Qingdao, China) and Sephadex LH-20 (Amersham Biosciences, Piscataway, NJ, USA) columns.
+ Open protocol
+ Expand
3

UHPLC-HESI-Q Exactive Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Equipment: A Thermo Scientific Dionex Ultimate 3000 UHPLC system operated by Chromeleon 7.2 Software (Thermo Fisher Scientific, Bremen, Germany) hyphenated with a Thermo high resolution Q Exactive focus mass spectrometer (Thermo, Bremen, Germany) were employed for analysis. Nitrogen obtained from a generator (Ciantecnologica, Seville, Spain) was used as both the collision and damping gas. All calibration and equipment parameters were set as reported (Simirgiotis et al., 2016 (link)).
LC parameters: The column used was a UHPLC C18 column (Acclaim, 150 mm × 4.6 mm ID, 2.5 µm, Restek Corporation, Bellefonte PA, USA) operated at 25 °C. The detection was set at 320, 254, 280, and 440 nm, and 800–200 nm in the PDA was recorded. Mobile phases were 1% formic aqueous solution (A) and acetonitrile with 1% formic aqueous solution (B). The gradient program was: (0.00, min, 5% B); (5.00 min, 5% B); (10.00 min, 30% B); (15.00 min, 30% B); (20.00 min, 70% B); (25.00 min, 70% B); (35.00 min, 5%B); and 12 minutes before each injection for equilibration. The flow rate was set at 1.00 mL min−1, and the injection volume was 10 µL.
MS parameters: The HESI II and other parameters were optimized as previously reported (Simirgiotis et al., 2016 (link)).
+ Open protocol
+ Expand
4

Analytical Characterization of Natural Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
The optical rotations were measured with a Jasco DIP-370 digital polarimeter (JASCO Corporation, Tokyo, Japan). UV spectra were recorded on a Shimadzu UV-2401 PC spectrophotometer (Kyoto, Japan). NMR spectra were recorded on Avance III-600 spectrometers (Bruker Biospin, Rheinstetten, Germany) with tetramethylsilane (TMS) as an internal standard. The ESI-MS and HR-ESI-MS were recorded on a Thermo high resolution Q Exactive focus mass spectrometer (Thermo, Bremen, Germany). Column chromatography was performed on silica gel G (200–300 mesh, Qingdao Marine Chemical Inc., Qingdao, China) and Sephadex LH-20 (Amersham Pharmacia). Precoated silica gel GF254 plates (Qingdao Marine Chemical Inc., Qingdao, China) were used for thin layer chromatography (TLC). HPLC was performed on an LC3000 (Beijing Chuangxintongheng Science and Technology Co., Ltd., Beijing, China). Abamectin was purchased as a positive control from Solarbio.
+ Open protocol
+ Expand
5

Aqueous Bark Extract Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
For this study, an infusion was prepared using 3 g of dried chopped bark parts adding deionized water (200 mL) at 100 °C. Then, the solution was lyophilised (Labconco) to obtain 98 mg of edible aqueous extract (EI-EXT).
A Thermo Scientific Dionex Ultimate 3000 UHPLC system, hyphenated with a Thermo high resolution Q-Exactive focus mass spectrometer (Thermo, Bremen, Germany) was used for the analysis. The chromatographic system was coupled to the MS with a Heated Electrospray Ionization Source II (HESI II). XCalibur 3.0 software (Thermo Fisher Scientific, Bremen, Germany) and Trace Finder 3.2 (Thermo Fisher Scientific, San José, CA, USA) were used for UHPLC control and data processing, respectively. Solvent delivery was performed at 1 mL/min using ultra-pure water supplemented with 1% formic acid (A) and acetonitrile with 1% formic acid (B). A program started with 5% B at zero time, then maintained 5% B for 5 min, then changed to 30% B within 10 min, then maintained 30% B for 15 min, then increased to 70% B for 5 min, then maintained 70% B for 10 min, and finally returned to 5% B in 10 min.
+ Open protocol
+ Expand
6

Metabolomic Analysis of Fungal Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
The WT and mutant strains were inoculated into PD broth at 28°C and 180 rpm for 5 days, and then the fermentation broth was extracted using ethyl acetate and dried under a vacuum. The dried crude extract samples were dissolved into methanol, and the volume was fixed to 1 mL according to the dry weight of mycelia of each sample and the mass volume ratio. The experiment was repeated three times independently and analyzed by LC-MS using a Thermo Scientific Dionex Ultimate 3000 UHPLC system with a Thermo high-resolution Q Exactive focus mass spectrometer (Thermo, Bremen, Germany). Untargeted metabolomics analysis was performed using Compounds Discoverer 3.0 software (Thermo Fisher Scientific, Carlsbad, CA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!