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Gel recovery kit

Manufactured by Solarbio
Sourced in China

The Gel Recovery Kit is a tool for extracting and purifying DNA fragments from agarose gels. It provides a simple and efficient method to isolate and recover DNA of interest from gel electrophoresis. The kit includes the necessary solutions and columns to facilitate the DNA extraction process.

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3 protocols using gel recovery kit

1

Isolation and Identification of Calcium-Solubilizing Bacteria

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The collected samples were mixed with a vortex mixer (Scilogex, United States) for 5 min, serially diluted (10−1 to 10−9), and 0.1 mL of each of the 10−3 to 10−7 dilutions was applied to MRS agar containing calcium carbonate. Individual colonies with soluble calcium circles were selected for passaging on MRS agar and incubated for 48 h at 37°C. After three passages, the isolates were stored frozen in 50% (w/v) sterile glycerol at −80°C. Supplementary Figure S1 shows the morphological and gram staining results of GLP02 and GLP06.
To identify the isolates, genomic DNA was extracted using a DNA extraction kit (Tsingke, China). Polymerase chain reaction (PCR) amplification was performed using the primers 16S-27F (5’-AGAGTTTGATCCTGGCTCAG-3′) and 16S-1492R (5’-TACGGCTACCTTGTTACGACTT-3′) under the following conditions: pre-denaturation at 94°C for 5 min, denaturation at 94°C for 45 s, annealing at 55°C for 30 s, and extension at 72°C for 45 s for 30 cycles, then extension at 72°C for 10 min. The PCR products were identified by 1.0% agarose gel electrophoresis, and the target bands were recovered with a gel recovery kit (Solarbio, China) and sent to Tsingke Biological Technology for sequencing. A phylogenetic tree was constructed using Mega 11.0 software to determine the evolutionary relationships of the isolated strains.
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2

Cloning tLyp-1-lamp2b Fusion Protein

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Total RNA was extracted from Hela cells using total RNA extraction kit, which was reversely transcribed into cDNA using reverse transcription kit (Solarbio, Beijing, China). tLyp-1 +  lamp2b gene was amplified by PCR using cDNA as template, purified and recovered by using gel recovery kit (Solarbio, Beijing, China). The pEGFP-C1 and tLyp-1-lamp2b genes were digested by Bgl II and BamH I enzymes, then connected by T4 ligase. The connection products were transformed into DH5α competent cells (stored at −80 °C, Thermo Scientific, Waltham, USA) and cultured for 12 h. Single colony was culled for plasmid extraction. Lipofectamine 3000 transfection reagent (Invitrogen, USA) were used to transfect pEGFP-C1 plasmid vector expressing tLyp-1-lamp2b fusion proteins into HEK293T cells.
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3

Lentiviral Overexpression of LAMP-2B and HIF1α Knockdown

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The LAMP-2B + 5′-TGTTGTGGTAAACGTAAA-3′ (gene sequence of CCGKRK) gene was amplified from cDNA template by PCR, then purified and recovered with a gel recovery kit (Beijing Solarbio Science & Technology Co., Ltd.). The gene was subsequently cloned and ligated to the GV493 vector (hU6-MCS-CBh-MCS-IRES-puromycin; Shanghai GeneChem Co., Ltd.). A 3rd generation system was used to package the lentivirus. Additionally, an sh-HIF1α sequence (5′-ACGACAAGAAAAAGATAAGTT-3′) was also ligated into the same GV493 vector using an independent promoter. Upon transduction into cells, the lentiviral particles generated in this manner facilitated the overexpression of both LAMP-2B + CGKRK and HIF1α shRNA. The vectors (100 nM) and packaging plasmids (vector:packaging vector:envelope ratio, 10:3:1) were co-transfected into 1×106 293T cells with Lipofectamine 2000 at 37°C for 8 h. The sh-HIF1α-LAMP-2B lentivirus and negative control (empty vector) were collected and filtered through a 0.45 µM filter after 293T cells were cultured at 37°C for 3 days. MSCs were then transduced with lentiviral vectors at a MOI of 10 for 8 h followed by replacement with fresh medium. MSCs were cultured at 37°C for 48 h and subsequently treated with puromycin (1 µg/ml) for 48 h to select stably transduced cells, 0.5 µg/ml puromycin was used for maintenance.
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