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Irdye 800cw donkey anti rabbit secondary antibody

Manufactured by LI COR
Sourced in United Kingdom, United States

The IRDye 800CW donkey anti-rabbit secondary antibody is a fluorescently labeled antibody that binds to rabbit primary antibodies. It is designed for use in western blotting, immunohistochemistry, and other immunoassay applications that require detection of rabbit primary antibodies.

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9 protocols using irdye 800cw donkey anti rabbit secondary antibody

1

Antibodies against SEIP-1 Protein

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Antibodies against SEIP-1 were raised by injection of the peptide 261KKEEPGLLDLRKRK, corresponding to the C-terminus of SEIP-1, into rabbits (YenZym). Antibodies were purified against the antigen immobilized on the AminoLink Plus Coupling resin (Pierce, #44894) and used in western blotting at a dilution of 1:100. IRDye 800CW donkey anti-rabbit secondary antibodies (LI-COR) were used at 1:5000. Fluorescence signals were visualized using an Odyssey Infrared Imaging system (LI-COR) and analyzed using Odyssey software according to manufacturer’s instructions. Background signals were measured from multiple areas of the blot without proteins, averaged, and subtracted from integrated intensity of each protein band. The non-specific signal from a ~95 kDa protein was used as the loading control unless otherwise indicated. An uncropped scan of the western blot in Fig. 1d is shown in Supplementary Fig. 9.
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2

TRPV4 Protein Expression in HMVEC

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Western blot. HMVEC were collected and treated as follows: 1) For total protein extracts, cells were mechanically lysed with RIPA buffer (Santa Cruz) supplemented with protein inhibitors, and spun down at 10,000g for 10 min at 4 °C. 2) For membrane protein fractions, cells were sonicated in PBS pH 7.4 (with protease inhibitors) and spun down at 8,000g. Supernatant was spun down at 160,000g for 1 h at 4°C. Membrane pellets were solubilized with 2% SDS and spun down at 160,000g for 1 h at RT. Supernatants from total protein extract and membrane protein fractions were loaded in Mini-PROTEAN TGX Stain-free Precast gels and were exposed to UV for 45s before transfer. Anti-TRPV4 (1:200, Santa Cruz) and IRDye® 800CW Donkey Anti-Rabbit secondary antibodies (1:10,000, LI-COR) were used for western blots. Membranes were developed in a LI-COR and ChemiDoc Touch imaging system (Bio-Rad), for infrared and UV signals, respectively. Immunostaining. HMVEC were fixed with 4% paraformaldehyde for 15 min; permeabilization was achieved with 0.1% Triton X-100 in PBS for 15 min. HMVEC were incubated with primary anti-TRPV4 antibody (1:250; Alomone Cat # ACC-124) at 4 °C overnight. Samples were washed and incubated with goat anti-rabbit IgG secondary antibody conjugated to goat anti-rabbit IgG-TR (1:200 Cat # sc-2780). Fluorescence was detected with a Zeiss Axiophot 200 LSM Pascal.
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3

SDS-PAGE and Western Blotting Protocol

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Protein samples were boiled in 2x SDS sample buffer for 5 minutes and loaded into 4–20% Mini-PROTEAN TGX Precast Gels (Bio-Rad 456). If used for Western Blots, SDS gels where transferred to immobilon-P PVDF membranes (Milipore). Immunoblots were blocked for 1 hour with 1% non-fat dry milk in 1x TBS buffer containing 0.1% Tween-20 (TBST). The membranes were then probed overnight at 4°C with rabbit anti-FLAG antibody (Thermo Fisher Scientific 740001; 1:8000) diluted in 1% non-fat dry milk. Membranes were then washed three times with TBST and incubated with IRDye 800CW Donkey anti-Rabbit secondary antibodies (Li-cor 925–32213) for 1 hour at room temperature. The signal was visualized by Licor Odyssey CLx. If SDS gel was submitted for in-gel digestion and mass spectrometry (below), then gel was incubated in Coomassie blue stain overnight at room temperature and destained with DI water.
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4

Western Blot Analysis of Metabolic Proteins

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Proteins were isolated from tissues with lysis buffer [100 mM tris-HCl (pH 6.8), 2.0% SDS, 20% glycerol, 0.02% bromophenol blue, 5% 2-mercaptoethanol, 100 mM NaF, and 1 mM Na3VO4]. The concentration of homogenized protein lysates was determined by the Bradford method (Bio-Rad). The following antibodies were used for the detection of target proteins: UCP1 (#14670), phospho-PKA (#5661), total PKA (#4782), phospho-AMPK (#2535), and total AMPK (#2793) were purchased from Cell Signaling Technology (Danvers, MA). Antibodies against glucose transporter 4 (GLUT4; sc-1607), apelin (sc-293441), and HIF-1α (sc-13515) were purchased from Santa Cruz Biotechnology (Dallas, TX). PRDM16 (PA5-20872; Thermo Fisher Scientific, Rockford, IL) and PGC-1α (no. 66369-1-Ig; Proteintech, Rosemont, IL) were also purchased. Antibodies against β-actin and β-tubulin were obtained from the Developmental Studies Hybridoma Bank (Iowa City, IA). IRDye 680 goat anti-mouse secondary antibody (1:10,000), IRDye 800CW donkey anti-rabbit secondary antibody (1:10,000), and IRDye 800CW donkey anti-goat secondary antibody (1:10,000) were purchased from LI-COR Biosciences (Lincoln, NE). The target proteins were detected using the infrared imaging system (Odyssey, LI-COR Biosciences), and intensity of band was quantified using Image Studio Lite (LI-COR Biosciences) (16 (link)).
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5

Western Blot Quantification of Glutamate Transporters

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Finally, we measured the protein levels of glutamate transporters GLT‐1 and xCT in the NAc using Western blot. For this, proteins from NAc were extracted using T‐PER lysis buffer (Thermo‐Fisher) supplemented with a protease inhibitor. 25 μg of protein were loaded into each lane. The GLT‐1 protein was identified using a guinea pig anti‐GLT‐1 primary antibody (Cat AB1783, Millipore, 1:500 dilution) and an IRDye 800CW donkey anti‐guinea pig secondary antibody (Cat 925‐32411, LI‐COR, 1:10,000 dilution). For xCT detection, a rabbit anti‐xCT primary antibody (Cat AB175186, Abcam, 1:500 dilution) was used in conjunction with an IRDye 800CW donkey anti‐rabbit secondary antibody (Cat 926‐32213, LI‐COR, 1:10,000 dilution). β‐actin, detected using a mouse anti‐β‐actin primary antibody (Cat sc‐47778 Santa Cruz Biotechnology, 1:200 dilution) and an IRDye 800CW goat anti‐mouse secondary antibody (Cat 926‐32210, LI‐COR), served as the loading control. The reactive bands were captured with the Odyssey Imaging System (LI‐COR), and the intensities were quantified using Image Studio Lite 5.2 software.
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6

Western Blot Analysis of C/EBPα

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5 × 106 cells were lysed in RIPA buffer (Fisher Scientific) and the lysates were size-separated by 12% SDS-PAGE. Proteins were transferred to an Immobilon-FL PVDF membrane (Sigma-Aldrich). The membrane was incubated with the REVERT total protein stain (Licor) and imaged in the 700nm channel of a Licor Odyssey Fc near-infrared imaging system. Subsequently the membrane was incubated with a Rabbit anti-mouse C/EBPα (D56F10) monoclonal antibody (Cell Signaling Technology Cat# 8178, RRID:AB_11178517) and an IRDYE 800CW Donkey anti-rabbit secondary antibody (LI-COR Biosciences Cat# 925-32213, RRID:AB_2715510). The membrane was imaged in the 800nm channel to detect C/EBPα. The data were analyzed using Image Studio (LI-COR) and the total fluorescence in each band was measured and summed. Total C/EBPα fluorescence was normalized against the total fluorescence in the total protein stain.
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7

Native Dot Blot Analysis of aSyn

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Native dot blot analysis of aggregated aSyn was performed by applying the cell lysate containing 10 µg total protein on a nitrocellulose membrane (0.45 µm, Buckinghamshire, UK) in a total volume of 5 µL. Membrane was air-dried for 3 h and subsequently blocked in 5% non-fat dry milk in TBS for 1 h at RT. Aggregated aSyn was probed by using a rabbit conformation-specific antibody MJFR-14-6-4-2 (Abcam, Cambridge, UK) in combination with IRDye 800CW donkey anti-rabbit secondary antibody (LI-COR Biosciences, Lincoln, NE, USA) using the identical immunostaining protocol for WB. Fluorescent signals were detected by using the Odyssey imaging system (LI-COR Biosciences). Loading of total protein was controlled by staining total protein loaded using direct blue 71 according to Hong et al. [53 ]. For this purpose, the blot membrane was stained by using a working solution of direct blue 71 containing 0.008% direct blue 71 (Sigma Aldrich), 40% Ethanol and 10% acetic acid for 5 min at RT, followed by rinsing the membrane with 40% ethanol and 10% acetic acid.
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8

Western Blot Analysis of Retinal Rhodopsin

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Eyes were dissected in cold PBS and retinas were lysed in lysis buffer (100 µL per retina) composed of 20 mM Tris-HCl, pH 8, 150 mM NaCl, 2.5 mM EDTA, 10% glycerol, 0.5% Triton X-100, 0.01% Nonidet P-40 substitute, protease inhibitor and phosphatase inhibitor tablets (Roche Diagnostics, Indianapolis, IN, USA). Blots were probed with antibodies against rhodopsin (ab98887; Abcam, Cambridge, MA, USA) and β-actin (4970L; Cell Signaling Technology, Danvers, MA, USA). Immunoblots were visualized using IRDye 800CW donkey anti-rabbit secondary antibody (925-32213; Li-Cor Biosciences, Lincoln, NE, USA) and IRDye 680CW donkey anti-mouse secondary antibody. Membranes were scanned with an Odyssey infrared scanner (Li-Cor Biosciences). Densitometric analysis was performed using image studio version 5.2 (Li-Cor Biosciences). For the quantitation, 4 independent proteins blots were used and each lane represents retinal lysates from different animals. Six to eight animals were used per genotype for the normoxia and hyperoxia conditions.
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9

Quantifying Sarkosyl-insoluble Tau Proteins

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Sarkosyl-insoluble tau was separated on 10% SDS-polyacrylamide gels and blotted onto nitrocellulose membranes using standard procedures. The blots were probed with a pan-tau rabbit polyclonal TP70 antibody that recognizes the carboxy-terminus of tau 36 (link),37 (link) (1/15 000; kind gift from Dr Diane Hanger, King's College, London) and IRDye 800CW Donkey Anti-Rabbit secondary antibody (Li-Cor Biosciences) followed by imaging on a Li-Cor Odyssey Infrared Scanner.
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