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Anti iba1

Manufactured by Novus Biologicals
Sourced in United States

Anti-Iba1 is a primary antibody that recognizes the Iba1 (Ionized Calcium Binding Adaptor Molecule 1) protein. Iba1 is a calcium-binding protein that is primarily expressed in macrophages and microglia, making it a useful marker for these cell types.

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6 protocols using anti iba1

1

Microglia Visualization in Brain Tissue

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Brain tissues were stained and clarified following the iDISCO + protocol (https://idisco.info/idisco-protocol/). The protocol was executed precisely, with primary and secondary antibody incubations lasting 7 days each following methanol pretreatment. The primary antibody used was anti-Iba1 (Novus Biologicals, cat: NB100-1028) at 2 ug/mL and the secondary antibody was Alexa Fluor 647 AffiniPure Donkey Anti-Goat IgG (Jackson Immunoresearch, cat.: 705-605-147) used at 15 ug/mL. Following clarification, the samples were imaged using LaVision UltraMicroscope II (Northwestern University) equipped with an Andor Neo cMOS camera and a 2XC/0.50 NA objective lens (Olympus) with a 6-mm working distance dipping cap. We imaged using the 640-nm laser with a step size of 10um and the continuous scanning light sheet method. Data were analyzed and images generated using Imaris software (Bitplane). Three biological replicates per treatment group were used for this experiment.
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2

Immunofluorescence Staining Protocol

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Immunofluorescence was performed as previously described [43 (link)–46 (link)]. Briefly, samples were incubated overnight at 4 °C with mouse monoclonal anti-GFAP (BD Biosciences, Cat# 610566, RRID: AB_397916, 1:500), rabbit polyclonal anti-Cx43 (Cell Signaling Technology, Cat# 3512, RRID: AB_2294590, 1:200), goat polyclonal anti-IBA1 (Novus Biologicals, Cat# NB100-1028, RRID: AB_521594, 1:500). The following day, sections were washed in 0.1% Triton X-100 in PBS 3 times at room temperature and then incubated 1 hr at room temperature with appropriate combination of secondary antibodies: goat polyclonal anti-mouse (Alexa Fluor 488, Thermo Fisher Scientific, Cat# A-11001, RRID: AB_2534069, 1:1’000), goat polyclonal anti-rabbit (Alexa Fluor 564, Molecular Probes, Cat# A-11010, RRID: AB_143156, 1:1’000) and donkey anti-goat (Alexa Fluor 647, Thermo Fisher Scientific, Cat# A-21447, RRID:AB_2535864). Nuclei were counterstained with DAPI (1:10’000, Invitrogen) for 5 min at room temperature and then mounted with BrightMount mounting medium (Abcam). Profile plots for immunofluorescence images were obtained as previously described [43 (link)].
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3

Retinal Cell Immunostaining in Ischemic Injury

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Exo-green MSC-EV-injected ischemic and normal rats were anesthetized at different time points (1, 3, and 7 days) after intravitreal injections and subjected to whole animal perfusion-fixation with PBS and 4% paraformaldehyde [52 (link)]. Following enucleation, the eye cups were prepared by removing the cornea, lens and vitreous. The eyecups were post-fixed in 4% PFA for 30 min, washed twice in PBS, and permeabilized with PBST (0.3% Triton X-100 in PBS, twice). The eye cups were blocked overnight in 2% Triton X-100, 10% normal serum and 1 mg/ml BSA [53 ]. The primary antibodies anti-IBA-1 for retinal microglia [54 (link)] (1:500, Novus Bio, Littleton, CO), and anti-Brn-3a for retinal ganglion cells [55 (link)](1:500, EMD Millipore), and anti-β-tubulin III for retinal neurons [56 (link)] (1:500, Sigma), were incubated with the eyecups at 4°C for 48 h followed by washing and incubation with the appropriate secondary antibodies (Alexa Fluor 555 and 647, Molecular Probes, Thermo-Fisher) for an additional 48 h at 4°C. The samples were washed again, and the retinal tissues carefully dissected from the choroid and placed on a glass slide and mounted with Pro-Long Diamond Antifade Mounting Solution with DAPI (Life Technologies, Thermo-Fisher). Slides were imaged using a Zeiss 710 confocal at 63 and 100× oil immersion magnification, and images deconvoluted using Zeiss Zen v2.4 software.
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4

Immunofluorescence Staining of BV2 Microglia

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BV2 microglia were washed with phosphate buffer saline solution; fixed with 4% buffered paraformaldehyde; incubated overnight at 4°C with primary antibodies, including anti-NLRP6 (1 : 500; Santa Cruz, USA) and anti-Iba-1(1 : 500; Novus, USA); and incubated with anti-goat secondary antibody (Proteintech, USA) and anti-rabbit secondary antibody (Proteintech, USA). Then, the cell nuclei were stained with DAPI (Beyotime, China). Cells were observed under an inverted fluorescence microscope (Olympus, Japan).
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5

Spinal Cord Immune Cell Profiling

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Spinal cord sections were blocked with a blocking solution containing 5% non-fat milk powder, 1% bovine serum albumin and 0.3% Triton-X100 in 0.1 M PBS (all Sigma-Aldrich, USA) for 1 h at room temperature. The following primary antibodies, diluted in the same blocking solution, were then added and incubated at 4 °C overnight: Anti-Iba1 (1:200; Novus Biologicals, USA) for macrophages, anti-iNOS (1:100; Abcam, USA) for M1-macrophages, anti-CD206(1:200; Bio-Rad, Germany) for M2-macrophages, anti-TMEM119 (1:200; Abcam, USA) for microglia, anti-CD3 (1:200; Bio-Rad, Germany) for T-Lymphocytes and anti-GFAP (1:250; Abcam, USA) for astrocytes. Isotype controls with non-specific immunoglobulin at the same concentration were performed to ensure the specificity of the antibodies (data not shown).
As secondary antibodies, Alexa Fluor 405 donkey antigoat (1:400; Abcam, USA), Alexa Fluor 557 donkey antimouse (1:400; R&D Systems, USA) and Alexa Fluor 647 donkey anti-rabbit (1:400; Abcam, USA), diluted in blocking solution without Triton-X100, were used and applied for 1 h at room temperature before covering the sections with mounting medium.
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6

MPTP-Induced Neurodegeneration: Mechanistic Insights

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1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP, M0896), 1-methyl-4-phenylpyridinium (MPP + , D048), and MG-132 (M8699) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Lipofectamine 2000 (11668027) was purchased from Thermo-Fisher Scientific (CA, USA). Anti-RAGE (rabbit polyclonal, ab3611) was purchased from Abcam (Cambridge, MA, USA). Anti-phospho JNK (rabbit polyclonal, #9251) and anti-total JNK (rabbit polyclonal, #9252) were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-GFAP (chicken polyclonal, ab4674) and anti-HMGB1 (rabbit polyclonal, ab18256), were purchased from Abcam (Cambridge, MA, USA). Anti-Iba1 (goat polyclonal, NB100-1028) was purchased from Novus (Littleton, CO, USA). Anti-TH (rabbit polyclonal, AB152) was purchased from Millipore (Temecula, CA, USA). Anti-PARP (rabbit polyclonal, sc-7150), anti-actin (rabbit polyclonal, sc-1616), anti-ubiquitination (mouse monoclonal, sc-8017), and Protein A/G PLUS-agarose beads (sc-2003) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Recombinant human HMGB1 (1690-HMB) was purchased from R&D Systems (Minneapolis, USA). RAGE antagonist/inhibitor (553030) was purchased from Calbiochem (Temecula, CA, USA). JNK inhibitor SP600125 (S5567) was purchased from Sigma-Aldrich.
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