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4 protocols using eclipse 80i microscope

1

Labeling Adult and Larval Cell Proliferation

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Epifluorescent and bright field images were taken from a Nikon Eclipse 80i microscope using the Hamamatsu ORCA-ER camera. Adults: Gentamicin (20 ul of 2 mg/ml) and BrdU (20 ul of 5 mg/ml) were administered by intraperitoneal injection (Diep and Davidson, 2011 ). The kidneys were dissected 4 hours after BrdU injection and processed for histological staining and immunohistochemistry. Larvae: 40 kDa dextran-FITC (1–100 nl of 150 ug/ml) and BrdU (1–100 nl of 5 mg/ml) were injected near the tail region using glass capillary needles. Larvae were processed 4 hours after BrdU injection for histological staining and immunohistochemistry.
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2

Microscopic Observation of Brucella and E. coli

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Brucella strains and infected HeLa cells were observed with a Nikon 80i (objective phase contrast × 100, plan Apo) connected to a Hamamatsu ORCA-ER camera. For the observation of bacteria, 1.5 μl of an exponential phase culture was dropped on agarose pad (solution of 1% agarose in PBS) and sealed with VALAP (1/3 of vaseline, 1/3 of lanoline and 1/3 of paraffin wax).
Time-lapse experiments with B. abortus strains were performed from cultures in exponential phase in liquid Plommet–erythritol containing K2HPO4 (0.92 g l−1), KH2PO4 (3 g l−1), Na2S2O3 (0.1 g l−1), NaCl (5 g l−1), Nicotinate (0.2 g l−1), Thiamine (0.2 g l−1), (NH4)2SO4 (0.5 g l−1), Pantothenate (0.07 g l−1), Erythritol (2 g l−1), MgSO4·7H2O (10 g l−1), MnSO4 (1.1 g l−1), FeSO4·7H2O (1 g l−1) and Biotine (1 g l−1). Cultures were spread on a sealed Plommet–erythritol agarose 1% pad. Images were automatically taken every 20 min at 32 °C with NIS-Element software (Nikon).
Imaging of E. coli strains was performed using either a Nikon Eclipse 80i microscope equipped with a Hamamatsu Orca II-ER camera ( × 100 differential interference contrast or phase-contrast objectives, optivar × 1.5 when appropriate) or a Nikon Eclipse Ti-U with a Hamamatsu Orca-ER LCD camera ( × 100 phase-contrast objective). Images were processed with Metamorph software (Molecular Devices, Sunnyvale, CA).
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3

Visualizing Neurodegeneration in C. elegans

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Animals were mounted on 2% agar pads and anesthetized using 30 mM sodium azide. GFP fluorescence was visualized using a Zeiss Observer Z1 microscope equipped with an Apotome 2 and X-Cite® 120LED fluorescence illuminator. Neurodegeneration was manually scored by counting the number of cell bodies and by assessing neurite morphologies and trajectories. Samples were analyzed in duplicates with n = 25–30 per genotype per experiment.
Whole animal fluorescence was quantified in hsp-4p::GFP and hsp-6p::GFP reporter lines using a Nikon Eclipse 80i microscope equipped with a mercury lamp power supply (C-SHG1) and Hamamatsu ORCA-ER digital camera (C4742-80). Images were processed using NIH ImageJ (rsbweb.nih.gov/ij) software. Samples were analyzed in triplicate with n = 30 per genotype per experiment.
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4

Immunofluorescent Analysis of Apoptosis and Signaling

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Immunostaining was performed on 12 μm sections using rabbit anti-active Caspase 3 (1:500; BD Biosciences; 59565), rabbit anti-phospho-Ribosomal protein S6 (Ser235; 1:500; Upstate; 07-433), mouse anti-Islet1 (1:100; Developmental Studies Hybridoma Bank; 39.3f7), Alexa Fluor 488 goat anti-rabbit and Alexa Fluor 594 goat anti-rabbit (both 1:1000; Invitrogen). Antigen retrieval was performed by steaming with 0.01 M sodium citrate (pH 6) prior to staining for pS6. Nuclei were labelled with 0.1 μg/ml DAPI (Invitrogen). Immunofluorescent sections were imaged with an Olympus Fluoview FV1000 laser-scanning confocal microscope or with a Nikon Eclipse 80i microscope and Hamamatsu Orca-ER camera. All images were analysed using ImageJ (NIH) or Openlab (Perkin Elmer).
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