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10 protocols using anti akts473

1

Immunohistochemical Quantification of Protein Signaling

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Histochemical analysis by Haematoxylin-Eosin, anti-RpS6S235/6, anti-AktS473 (Cell Signalling Technologies) and Pten (51-2400) immunostaining was performed as previously described40 (link),41 (link). Immunohistochemical analysis of AMD1 (Proteintech, dilution 1/100) was performed using DAKO envision Flex High pH (DAKO). The scoring system was based on the quantification of the % of cells negative, low (1+), medium (2+) or high (3+) immunoreactivity. Subsequently, H-score was calculated as follows: H = [percentage of cells 1+] + [2 x (percentage of cells 2+)] + [3 x (percentage of cells 3+)]. Differential H score was calculated as follows: ΔH = H[on treatment] – H[pre-treatment].
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2

Antibody-based protein detection protocol

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Mouse monoclonal anti-actin (clone C4), rabbit polyclonal anti-p-FAK (Y397) and mouse monoclonal anti-FAK (Clone 4.47) were purchased from Millipore (Billerica, MA, USA), rabbit polyclonal anti-SCP-2 was from Abcam (Cambridge, UK) and rabbit polyclonal anti-p-FAK (Y925) was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Rabbit polyclonal anti-p-Paxillin (Y118), anti-Paxillin, anti-Akt (S473) and anti-Akt were purchased from Cell signaling (MA, USA). Human full length His-tagged ADRM1 (His-ADRM1) and GST-tagged HR23B (GST-HR23B) proteins were purchased from ATgen (Gyeonggi-do, Korea) and Abnova (Taipei, Taiwan) respectively.
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3

Immunostaining and Western Blot Antibodies

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For immunostaining, the following antibodies were used: anti-p-AKT (S473, #4060) and anti-p-ERK1/2 antibodies (#4370) from Cell Signaling Technology; anti-BrdU antibody from Abcam (ab6326); anti-SNAIL antibody (sc28199) from Santa Cruz; and anti-CD144 (VE-cadherin) antibody from BD Pharmingen (550548). For western blotting or IP (Immunoprecipiation), the following antibodies were used: anti-ACTB (AC-15) and anti-Flag antibody (F3165) from Sigma-Aldrich; anti-AKT (#9272), anti-AKT(S473, #4060), anti-p-AKT(T308, #2965), anti-EGFR antibody (#2232), anti-p-ERBB3(Y1289, #4791), anti-ERK1/2 (#9102), anti-p-ERK1/2 (#9101) antibodies from Cell Signaling Technology; anti-ERBB2 (sc284-G), anti-ERBB3 (sc285-R) and anti-ERBB4 antibodies (sc283-R) from Santa Cruz Biotechnology; anti-GAPDH antibody from Abfrontier (LF-PA0018); and anti-p-Tyr antibodies from BD Biosciences (610024).
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4

Quantitative Western Blot Analysis

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Cells were washed with ice-cold PBS and centrifuged at 400 × g for 5 min at 4 °C. The resulting pellet was lysed with RIPA buffer (KeyGEN) supplemented with 1x protease/phosphatase inhibitor (Solarbio). The homogenate was cleared by centrifugation at 4 °C for 10 min at 16,000 × g, and the supernatant containing the protein fraction recovered. Samples were subjected to electrophoresis in SDS-PAGE gels and transferred to PVDF membranes (Millipore). Membranes were blocked with 1% non-fat milk and incubated with primary antibodies overnight, followed by 1-hour incubation with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies at room temperature and washed 3 times. The following primary antibodies were used: anti-p-p38 MAPK (Cat.#YP0338), anti-p38 (Cat.#YT3513) (Immunoway), anti-AKT (S473) (Cat.#A5030), anti-AKT (Cat.# 10176-2-AP) (Cell Signalling Technology), anti-CDK1 (Cat.# CY516-50), anti-GAPDH (Cat.# 12231 P) (Abways), and anti-cyclin B1(Santa Cruz Biotechnology). Antigen-specific binding of antibodies was detected with the ECL (enhanced chemiluminescence) Plus reagents (Beyotime). Protein bands were quantified ImageJ software (Wright Cell Imaging Facility) and then normalized to the GAPDH loading control. For full scans of Western blots see Supplemental Figures S1–S2.
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5

Western Blot Analysis of Signaling Proteins

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Cells were washed with ice-cold PBS and centrifuged at 400 × g for 5 min at 4 °C. The resulting pellet was lysed with RIPA buffer (KeyGEN) supplemented with 1x protease/phosphatase inhibitor (Solarbio). The homogenate was cleared by centrifugation at 4 °C for 10 min at 16,000 × g, and the supernatant containing the protein fraction recovered. Samples were subjected to electrophoresis in SDS-PAGE gels and transferred to PVDF membranes (Millipore). Membranes were blocked with 1% non-fat milk and incubated with primary antibodies overnight, followed by 1-hour incubation with HRP-conjugated anti-rabbit or anti-mouse secondary antibodies at room temperature and washed 3 times. The following primary antibodies were used: anti-p-p38 MAPK (Cat.#YP0338), anti-p38 (Cat.#YT3513) (Immunoway), anti-AKT (S473) (Cat.#A5030), anti-AKT (Cat.# 10176-2-AP) (Cell Signalling Technology), anti-CDK1 (Cat.# CY516-50), anti-GAPDH (Cat.# 12231 P) (Abways), and anti-cyclin B1(Santa Cruz Biotechnology). Antigen-specific binding of antibodies was detected with the ECL (enhanced chemiluminescence) Plus reagents (Beyotime). Protein bands were quantified ImageJ software (Wright Cell Imaging Facility) and then normalized to the GAPDH loading control. For full scans of Western blots see Supplemental Figures S1–S2.
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6

Immunoblot Analysis of Cellular Signaling Proteins

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Cells were lysed either in RIPA buffer (Cell Signaling, Danvers, MA, USA) plus 0.2 % SDS and protease inhibitors, or directly in Laemmli buffer (10% SDS), before boiling and loading onto 10–12% SDS-page gels. Immunoblot analysis was performed as previously described (14 (link)). Rabbit monoclonal antibodies anti-RPS6, anti-RPS6-S235/236, anti-Akt-S473, anti-p70S6K-T389, anti-eIF2α-S51, anti-eIF4E-S209, anti-4E-BP1-T37/T46, anti-RSK1/2/3, anti-RSK1 (p90S6K1)-380, anti-RSK1-T573, anti-RSK1-T359/S363 and anti-eIF4B-S422 were all from Cell Signaling. Secondary HRP-conjugated anti-rabbit IgG antibodies were from either Cell Signaling or Pierce/Thermo Fisher Scientific (Rockford, IL, WI). Mouse monoclonal anti-β-actin was purchased from Sigma. Goat polyclonal anti-semaphorin-7A antibody was from R&D Systems. Donkey anti-goat antibody was from Santa Cruz. Immunoreactive bands were visualized with Super Signal West Femto chemiluminescent substrate (Pierce/Thermo Fisher Scientific). Bands were quantified using the FluorChem® Q Imaging System (Alpha Innotech/ProteinSimple, Santa Clara, CA, USA).
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7

Immunohistochemical Quantification of Protein Signaling

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Histochemical analysis by Haematoxylin-Eosin, anti-RpS6S235/6, anti-AktS473 (Cell Signalling Technologies) and Pten (51-2400) immunostaining was performed as previously described40 (link),41 (link). Immunohistochemical analysis of AMD1 (Proteintech, dilution 1/100) was performed using DAKO envision Flex High pH (DAKO). The scoring system was based on the quantification of the % of cells negative, low (1+), medium (2+) or high (3+) immunoreactivity. Subsequently, H-score was calculated as follows: H = [percentage of cells 1+] + [2 x (percentage of cells 2+)] + [3 x (percentage of cells 3+)]. Differential H score was calculated as follows: ΔH = H[on treatment] – H[pre-treatment].
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8

Antibody Use for Cellular Protein Analysis

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Antibodies used in this study are as follows. Anti-human Claspin, anti-mouse Claspin, anti-MCM4, and anti-MCM4 S6T7 were previously described.19 (link) Anti-LaminB (sc-6216), anti-Chk1 (sc-8408), anti-p53 (sc-99), anti-Claspin (sc-376773) and anti-MCM2 (sc-9839) were from Santa Cruz Biotechnology; anti-Flag (M185-3L) were from MBL; anti-Chk1 S345(#2341 or #2348), anti-Chk1 S317 (#2344), anti-mTor (#2983), anti-mTOR S2448 (#5536), anti-p44/42 MAPK (Erk1/2) (#4695), anti- SAPK/JNK (#9252), p38 MAPK (#8690), anti-p38 MAPK T180/Y182 (#4511), anti-p44/42 MAPK (Erk1/2) T202/Y204 (#4370), anti-SAPK/JNK T183/Y185 (#4668), anti-PDK1 (#3062), anti-PDK1 S241 (#3438), anti-PI3 kinase p110β (#3011), anti-PI3 kinase p110γ (#5405), anti-PI3 kinase p110α (#4249), anti-PI3 kinase class III (#3358), anti- p70 S6 kinase T389 (#9234), anti-p70 S6 kinase (#9202), anti-4E-BP1 T37/T46 (#2855), anti-4E-BP1 (#9644), anti-Caspase-3 (#14220), anti-Akt S473(#4058) and anti-Akt (#4691) were from Cell signaling; anti-tubulin (T5168) was from Sigma-Aldrich; anti-MCM2 S53(A300-756A) was from Bethyl; anti-p53 S37 (PAB12641) was from Abnova; anti-histone H2A.X Ser139 (05-636) and anti-histone H3 Ser10 (05-598) were from Merck Millipore; anti-Rb (GTX50459) was from GeneTex.
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9

Protein Extraction and Western Blot Analysis

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Adherent cells were lysed by RIPA lysis buffer (CWBIO) containing protease inhibitors (CWBIO) on ice for 30 min. BCA kit (Thermo Fisher) was used for protein concentration determination. Detailed protocols of Western blot had been described previously.
34 (link) Primary antibodies in this study included anti‐DKK1 (1:1000, ab109416, Abcam), anti‐GAPDH (1:5000, ab8245, Abcam), anti‐pan‐Akt (1:1000, 4691S, Cell Signaling Technology), and anti‐Akt‐S473 (1:1000, 4060T, Cell Signaling Technology). The secondary antibodies included goat anti‐rabbit IgG H&L (HRP) (1:5000, ab6721, Abcam) and goat anti‐mouse IgG H&L (HRP) (1:5000, ab6789, Abcam). Images were captured by photo system (Mini Chemi 910, SinSage).
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10

Cell Quantification and Gene Expression Analysis

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Cell number quantification was done with crystal violet [28 (link)]. Foci assays were performed seeding 500 cells per well (6-well plate) and staining and counting them by crystal violet. Lentiviral and retroviral transductions were performed as previously described [25 (link)]. Western blot was performed as previously described [29 (link)]. The following antibodies were used for Western blotting: rabbit panti-RpS6S240/244, anti-RpS6, anti-HSP90, anti-PTEN (138G6), anti-AKTS473, anti-AKT (all dilution 1:1000) and anti-cleaved PARP (D64E10)(dilution 1:1000) were all from Cell Signalling. RNA was extracted using NucleoSpin® RNA isolation kit from Macherey-Nagel (ref: 740955.240 C). 1 μg of total RNA was used for cDNA synthesis using qScript cDNA Supermix from Quanta (ref. 95048). Quantitative Real Time PCR (q-RTPCR) was performed as previously described [29 (link)]. Applied biosystems TaqMan probes: Gnmt/GNMT (Mm00494688_m1, Hs00219089_m1), FOXO1 (Hs00231106_m1) GAPDH/Gapdh (Hs02758991_g1/Mm99999915_g1), and B-ACTIN (Hs 99999903 m1).
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