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8 protocols using mir 124 inhibitor

1

Silencing MALAT1 and miR-124 in CTCL

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MiR-124 inhibitor, its scramble control and small interference RNAs targeting MALAT1 along with scramble control were obtained from Gene Pharma Co., Ltd. (Shanghai, China). siRNA against MALAT1 as well as MiR-124 inhibitors were transfected into CTCL cells using Lipofectamine 2000 (Thermo Fisher Scientific, China) according to the manufacturer’s instructions.
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2

Regulation of SND1-IT1 and COL4A1 in Gastric Cancer

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Two pcDNA3.1 constructs containing human SND1-IT1 full-length complementary DNA (cDNA) and COL4A1 cDNA, an anti-SND1-IT1 siRNA construct, miR-124 mimic, and miR-124 inhibitor and introduced into HGC-27 cells alone or in combination as required by using lipofectamine 2000 reagents in accordance with the instructions provided by the manufacturer (Invitrogen, USA). Forty-eight hours after transient transfection, HGC-27 cells were stimulated with exogenous TGF-β1 (2 ng/mL, Sigma Chemical, Aldrich Ltd.) for 24 h. All constructs, miR-124 mimic, miR-124 inhibitor, and their corresponding NC were synthesized by GenePharma (Shanghai, China).
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3

Regulation of SPRY2 and MMP-2 in SRA01/04 cells

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Short hairpin RNA (shRNA) targeting SPRY2 (shSPRY2; 10 nM; 5′-CCUUACCAUUCCUCCACUUTT-3′), shRNA targeting MMP-2 (shMMP-2; 10 nM; 5′-GCUGACCUGGAAGAGAACATT-3′) and their negative control (shNC; 10 nM; 5′-UUCUCCGAACGUGUC-3′), miR-124 mimics (10 nM; 5′-AACAUUCAACGCUGUCGGUGAGU-3′), NC mimics (10 nM; 5′-UUCUCCGAACGUGUCACGUTT-3′), miR-124 inhibitor (10 nM; 5′-ACUCACCGACAGCGUUGAAUGUU-3′) and NC inhibitor (10 nM; 5′-CAGUACUUUUGUGUAGUACAA-3′) were purchased from Shanghai GenePharma Co., Ltd. Cell transfection was performed in SRA01/04 (1×105 cells/well) using Lipofectamine® 2000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) for 48 h at 37°C according to the manufacturer's instructions. The full-length of SPRY2 and MMP-2 were subcloned into pcDNA3.1 (10 nM; Shanghai GenePharma Co., Ltd.) to overexpress SPRY2 and MMP-2 levels with empty pcDNA3.1 (10 nM; Shanghai GenePharma Co., Ltd.) serving as the control. The efficiency of transfection was determined in each experiment using reverse transcription-quantitative (RT-q)PCR 48 h post-transfection. Subsequent experiments were performed at 48 h post-transfection.
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4

Optimization of miRNA Mimics and Inhibitors

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The mimics control with scrambled sequence, miR-106a mimics, miR-106b mimics, miR-124 mimics, inhibitor control with scrambled sequence, miR-106b inhibitor, miR-124 inhibitor, miR-22 inhibitor, and miR-29b inhibitor were purchased from GenePharma (GenePharma Co., Ltd., Shanghai, China). Transfection of miRNA mimics/inhibitor or their corresponding control (20 nM) was performed using the HiPerFect Transfection Reagent (Qiagen) according to the manufacturer’s instruction.
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5

Modulating miR-124 and lnc-NEAT1 in Diabetic Kidney Cells

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miR-124-inhibitor (5'-AUCAAGGUCCGCUGUGAACACG-3'; 50 pM) and NC-inhibitor (5'-AAGAACAACACAAAAGAACAG-3'; 50 pM) were purchased from Shanghai GenePharma Co., Ltd., which were respectively transfected into lnc-KD-transfected and HG-treated SV40 MES13 cells with the use of Lipofectamine 2000® (Invitrogen; Thermo Fisher Scientific, Inc.). This produced the lnc-KD + NC-inhibitor and lnc-KD + miR-124-inhibitor groups. Lnc-NEAT1 and miR-124 expression was assessed at 24 h after transfection. In addition, cell viability was evaluated at 0, 24, 48 and 72 h after transfection at 37˚C. In addition, cell apoptosis, fibrosis markers and inflammatory cytokines, in these two groups were assessed at 48 h after transfection. The expression of Capn1 and CTNNB1 was also determined by RT-qPCR and western blotting at 24 h after transfection.
Furthermore, 50 pM miR-124-inhibitor alone and 50 pM NC-inhibitor alone were transfected into HG-treated SV40 MES13 cells using the Lipofectamine 2000® (Invitrogen; Thermo Fisher Scientific, Inc.), followed by detection of lnc-NEAT1 and miR-124 expression at 24 h after transfection.
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6

Silencing miR-124 in PC-12 Cells

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The miR-124 silencing vector (miR-124 inhibitor) and the NC inhibitor were synthesized by GenePharma (GenePharma, Shanghai, China). PC-12 cells were inoculated on a 24-well plate. After the con uence of the cells reached about 50-60%, transfections were performed with the above vectors, according to the manufacturer's instructions, of lipofectamine 3000 (Invitrogen, CA, USA). The group of cells without any transfection was used as a control group. The cells were co-incubated with 0.5-5 μg/μL carrier solution in a cell incubator, at 37 ℃, for 2-3 days. When the transfection e ciency exceeded 95%, the PC-12 cells were collected.
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7

Transient Transfection of miR-124 and AKT

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All transient transfections were carried out using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) as described previously according to the manufacturer's protocol. Transient transfection of miR-124 mimics, miR-124 inhibitor, scramble, pc-DNA3.1(+)-AKT1, and pc-DNA3.1(+)-AKT2 plasmids were obtained from Shanghai GenePharma Co., Ltd (Shanghai, China) and were transfected at a final concentration of 20 nM with Lipofectamine 2000 according to the manufacturer's protocol. After 48 h of miRNA transfection, the cells were harvested for further studies. miR-124 mimics: 5′-UAAGGCACGCG GUGAAUGCCCAUUCACCGCGUGCCUUAUU-3′; miR-124 inhibitor: 5′-GGCAUUCACCGCGUGCCUUA-3′.
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8

Modulating miR-124, AR, and XIST Expression

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The expression of miR-124 was achieved by transfection of miR-124 mimics or miR-124 inhibitor (Genepharma, Shanghai, China) using Lipofectamine 2000 (Invitrogen). A pCMV-AR vector was used to achieve overexpression of AR (GeneCopoecia, Guangzhou, China). SiRNA1 (sense: 5'-UUU UGA AGC AUA UUU UGG CUU TT-3'; anti-sense: 5'-GCC AAA AUA UGC UUC AAA AGA TT-3') and siRNA2 (sense: 5'-AUA CUU UGG GCC UUC UAU CCA TT-3'; anti-sense: 5'-GAU AGA AGG CCC AAA GUA UAA TT-3')were used to achieve XIST knockdown (GenePharma, Shanghai, China), Cells were plated in 6-well plates or 96-well plates, transfected, incubated for 24 h or 48 h and used for further assays or RNA/protein extraction.
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