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6 protocols using anti flag rabbit mab

1

Characterizing DP2392-E10 Protein Interactions

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DP2392-E10 was photo-crosslinked onto Sepharose beads as described previously (Kanoh et al., 2005 (link)). The photo-crosslinked Sepharose beads without compound were used as control. NP-FLAG and FLAG-CRM1 proteins were purified as described (Chutiwitoonchai and Aida, 2016 , Chutiwitoonchai et al., 2014 (link)) from transfected HEK293T cells. Pull-down assays to assess the DP2392-E10/NP or DP2392-E10/CRM1 interaction were performed by incubation of 20 µl of DP2392-E10–photo-crosslinked Sepharose beads (50% slurry) and 2 µg of purified NP-FLAG or FLAG-CRM1 protein in bind/wash buffer at 4 °C overnight. The beads were pulled down, washed five times with bind/wash buffer, and subjected to western blot analysis with anti-FLAG rabbit mAb (Sigma-Aldrich).
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2

SDS-PAGE and Western Blot Protocol

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SDS-polyacrylamide gel electrophoresis and WB were performed as described previously [14 (link)]. Antibodies used for analysis were anti-NXT1 rabbit polyclonal antibody (pAb) (Abnova, Taipei, Taiwan), anti-CRM1 mouse monoclonal antibody (mAb) (BD Biosciences, San Jose, CA, USA), anti-NUP153 rat mAb (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-NUP98 rat mAb (Abcam, Cambridge, UK), anti-NUP62 mouse mAb (BD Biosciences), anti-E1B-AP5 (or hnRNP UL1) mouse mAb (Santa Cruz Biotechnology), anti-FLAG M2 mouse mAb (Sigma-Aldrich, Saint Louis, MO, USA), anti-FLAG rabbit mAb (Sigma-Aldrich), anti-HA mouse mAb (Medical and Biological Laboratories, Nagoya, Japan), anti-β-actin mouse mAb (Sigma-Aldrich), anti-WSN (influenza A/WSN/33) rabbit pAb (a gift from Dr. Kazufumi Shimizu, Nihon University School of Medicine, Tokyo, Japan), horseradish-peroxidase (HRP)-conjugated goat anti-mouse IgG (Amersham Biosciences, Uppsala, Sweden), or HRP-conjugated goat anti-rabbit IgG (Amersham Biosciences). The intensity of NP bands was quantitated by ImageJ 1.50 software (National Institutes of Health, Bethesda, MD, USA).
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3

Quantitative Binding Assay of NP-CRM1

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NP-FLAG–immobilized agarose beads and purified CRM1-HA protein from transfected HEK293T cells were prepared as previously described (Chutiwitoonchai et al., 2014 (link)). Pull-down assays of NP/CRM1 interaction with DP2392-E10 were performed by incubation of 15 µl of NP-FLAG–immobilized agarose beads (50% slurry), 2 µg of purified CRM1-HA protein, and either DMSO or 3, 10, 30, or 100 µM DP2392-E10 in bind/wash buffer (10 mM Tris-Cl [pH 7.8], 150 mM NaCl, 0.05% NP-40) at 4 °C overnight. The beads were pulled down, washed five times with bind/wash buffer, and subjected to western blot analysis with anti-HA mouse mAb (Medical and Biological Laboratories, Nagoya, Japan) and anti-FLAG rabbit mAb (Sigma-Aldrich). The intensity of CRM1 and NP bands were quantitated by ImageJ 1.50 software (National Institute of Health, Bethesda, MD, USA).
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4

Western Blot Protein Expression Analysis

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Western blots were performed as described previously 24 (link). The following primary antibodies were used: mouse anti-P2X2 monoclonal antibody (mAb) (1:500; Youke Biotech); rabbit anti-Flag mAb (1:1,000; Sigma-Aldrich, F7425); mouse anti-GAPDH mAb (1:5,000; Good Here, AB-P-R001); The polyvinylidene fluoride (PVDF) membranes were washed and incubated for 1 h at room temperature with the corresponding secondary antibodies: horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (1:5,000; ZSGB-Bio); HRP-conjugated goat anti-mouse IgG (1:5,000; ZSGB-Bio). Peroxidase activity was detected with SuperSignal WestPico chemiluminescent substrate (Pierce Biotechnology) and visualized and digitized with BIO-RAD Gel Doc XR imaging system (BIO-RAD, Germany). Protein levels, quantified by computer analysis as the ratio between each immunoreactive band and the levels of GAPDH, were expressed as a fold change of vehicle-treated control.
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5

Polyclonal Antibody Production for B. cenocepacia Hcp

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Polyclonal antibody to B. cenocepacia Hcp was raised in rats at the University of Sheffield Biological Services unit using N-terminal His-tagged Hcp which was purified following its overproduction in E. coli as described below. Rabbit anti-FLAG mAb and anti-VSVg pAb were obtained from Sigma-Aldrich (cat. no. F7425 and V4888, respectively), whereas rabbit anti-HA mAb was purchased from Cell Signaling Technology (cat. no. C29F4). HRP-conjugated mouse anti-MBP polyclonal antibodies were obtained from New England Biolabs (cat. no. E8038S). The mouse mAb to the β subunit of E. coli RNA polymerase was obtained from Neoclone (cat. no. W0023). Proteins harbouring a polyhistidine tag were detected using the HisProbe-HRP conjugate (Thermo Fisher, cat. no. 15165) or mouse anti-KLH-conjugated His-tag peptide (BioLegend, 652501). HRP-linked goat-derived (secondary) antibodies that cross-react to rat and rabbit IgG were obtained from SouthernBiotech (cat. no. 3050–05) and Vector Laboratories Ltd (cat. no. PI-1000), respectively. HRP-conjugated rabbit anti-mouse IgG secondary antibody were purchased from Thermo Fisher (cat. no. 31450).
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6

Immunofluorescence Assay for PCSK9 and CD163

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HeLa cells were seeded on sterile glass coverslips in 6-well plates then transfected with pCAGGS-PCSK9-Flag and/or pCAGGS-CD163-HA. Twenty-four hours post-transfection (hpt), the cells were washed with PBS twice, fixed with 550 uL of cold methyl alcohol for 10 min, and blocked with 5% bovine serum albumin (Shenggong, Shanghai, China) for 30 min. The transfected cells were washed with PBS three times, incubated with mouse anti-HA Mab (Sigma, Shanghai, China, 1:2000) and rabbit anti-Flag Mab (Sigma, Shanghai, China, 1:2000) for 1 h at 37 °C, and washed three times with PBS. The cells were then incubated at 37 °C for 1 h with donkey anti-mouse IgG (H + L) antibody conjugated with Alexa Fluor 596 (Life Technologies, Shanghai, China, 1:800) and goat anti-rabbit IgG (H + L) antibody labeled with Alexa Fluor 488 (Life Technologies, Shanghai, China, 1:800). The cells were counterstained with 5 μg/mL of 4′, 6′-diamidino-2-phenylindole (DAPI, Beyotime, Shanghai, China) for 10 min. Images were taken using a Zeiss confocal system (Zeiss, Germany).
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