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18 protocols using ficoll plaque plus

1

Isolation and Expansion of T Cells from Dry AMD Patients

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This research followed the tenets of the Declaration of Helsinki, and protocols for this study were approved by the by the Internal Research Board of Taipei Veterans General Hospital (Board No. 2013-11-012B). All samples were obtained after patients had given informed consent. PBMC was isolated from five patients with dry AMD and two unaffected control using Ficoll-Plaque Plus (Amersham Biosciences) according to the manufacturer's protocol. The characteristics of 5 patients with AMD were summarized in Figure 1C. In brief, one ratio of blood sample was layered on one ratio of Ficoll-Plaque Plus, pellet (400 × g, 30 min at 20°C) and the buffy coat was collected, washed twice with PBS and cultured in DMEM (Sigma) (100 IU/mL of penicillin, 100 μ g/mL of streptomycin [Flowlab] and 10% v/v Fetal Bovine Serum [FBS] [PAA, Austria]). T cells were expanded in freshly prepared AIM-V Medium (Invitrogen) supplemented with pen/strep/glutamine (Invitrogen) plus 300 IU/ml rhIL2 (Peprotech) and 10 ng/ml soluble anti-CD3 antibody (eBioscience, OKT3 clone) (Berger et al., 2003 (link)).
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2

Isolation and Culture of Early EPCs

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3 mL/kg peripheral blood was obtained from the C57BL/6J mice. Mononuclear cells (MNCs) were isolated by Ficoll-Plaque Plus (Amersham Biosciences) with density gradient centrifugation. MNCs were then rinsed and seeded on 6-well plates coated with human fibronectin (Sigma-Aldrich) and supplemented with EGM-2 (Cambrex). On 7 days of culture, the adherent cells (as early EPCs) were collected for transplantation. The early EPCs were maintained subsequently with acetyl-LDL (10 µg/mL; Molecular Probes, Carlsbad, USA) and isolectin (5 µg/mL; Molecular Probes). The staining of acetyl-LDL and isolectin in EPCs was determined under fluorescence confocal microscopy with the absorption wave lengths of 555 and 495 nm, respectively. EPCs (3 × 105 cells) were harvested for trypsinization 7 days after seeding for transplantation.
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3

Multiparametric Flow Cytometry Profiling of T Cell Subsets

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Peripheral blood mononuclear cells (PBMCs) were isolated using Ficoll-Plaque Plus density gradient centrifugation (Amersham Biosciences, NJ, USA). Fresh tissues were washed and cut into small fragments, prior to homogenization by tissue disaggregation vessels (BD Medimachine System). The cells in each sample were adjusted to a concentration of 2 × 106 cells/mL, and 0.5 mL cell suspension stimulated with 2μL Leukocyte Activation Cocktail and BD GolgiplugTM (BD Pharmingen, San Diego, CA, USA) for 4 hours.
T cell subsets were phenotyped in isolated PBMCs or tissue cells by flow cytometry (FACSAria flow cytometer, BD Biosciences, NJ, USA) according to manufacturer’s instructions. The cells were labelled with specific monoclonal antibodies; including anti-CD4-PerCP, anti-CD25-PE, anti- Foxp3-FITC, anti-IL-4-PE and anti-IFN-γ-FITC (all from BD Biosciences, NJ, USA). T cell subsets were selected for detailed phenotypic analysis as follow: (1) Th1 cells: IFN-γ+IL-4- CD4+ T cells; (2) Th2 cells: IFN-γ-IL-4+ CD4+T cells; (3) Treg cells: CD4+CD25+Foxp3+ T cells. A minimum of 106 cells per staining were assessed, with at least 105 events being measured. To measure CCRs in peripheral Treg cells, anti-CCR3, anti-CCR4, anti-CCR5 and anti-CCR8 (R & D Systems, Mineapolis, MN, USA) were used to evaluate corresponding receptor expression in circulating Treg cells of 3 groups.
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4

CLL Cell Isolation and DNA Damage Assay

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Peripheral blood was obtained from CLL patients with written informed consent in accordance with the Declaration of Helsinki and under protocols approved by the Institutional Review Board of the Ohio State University. CLL cells and normal B-cells were isolated using ficoll density gradient centrifugation (Ficoll-Plaque Plus; Amersham Biosciences) and enriched for B-cells using the Rosette-Sep negative selection kit (StemCell Technologies) according to manufacturer protocol. Cryopreserved cells used in the two prognostic datasets were obtained from the CLL Research Consortium (CRC) tissue bank or from the ECOG-2997 clinical trial. Cells were thawed in RPMI 1640 media then washed in PBS to obtain cell pellets.
The OSU-CLL cell line was grown in RPMI 1640 media supplemented with 10% fetal bovine serum, 2mM L-glutamine (Invitrogen), 100U/mL penicillin, and 100ug/mL streptomycin (Sigma). For DNA damage experiments, 2×106 cells were incubated with vehicle (DMSO), 10uM fludarabine (Sigma), 2.36uM mafosfamide (Santa Cruz), or 10uM fludarabine plus 2.36uM mafosfamide. All conditions were given equivalent volumes of DMSO.
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5

Lymphocyte Profiling in Infected Chickens

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The spleens and bursae were harvested at 2, 4 and 5 dpi from both the control group and the infected chickens, and were washed using Hank’s balanced salt solution. Afterwards, the samples were pressed through a 70 μm sterile wire mesh screen (SPL Life Sciences, China). The lymphocytes were isolated using Ficoll-Plaque Plus™ (Amersham Biosciences, USA) according to the recommended protocol by the manufacturer with slight modifications. Purified lymphocytes from each groups were separated into four different tubes and each of them were stained with 10 μg/ml of 10 μl FITC-labelled CD3, PE-labelled CD4, IgM and KUL01 and PerCP-labelled CD8 antibodies (Southern Biotech, USA), respectively, and analysed using a FACSCalibur™ flow cytometer with CellQuest™ Pro software (BD Bioscience, USA).
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6

Isolation of AML Mononuclear Cells

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Frozen vials of bone marrow from AML patients identified as harboring mutant FLT3 were thawed prior to processing. Mononuclear cells were isolated from normal bone marrow by density gradient centrifugation through Ficoll-Plaque Plus (Amersham Pharmacia Biotech AB, Uppsala, Sweden) at 2000 rpm for 30 minutes, followed by two washes in 1× PBS. Mononuclear cells were then tested in liquid culture (Iscove’s MDM, supplemented with 20% FCS). All bone marrow samples from AML patients were obtained under approval of the Dana-Farber Cancer Institute Institutional Review Board. Patient information is provided in Supplementary Table I.
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7

Isolation and Culture of Rat ECFCs

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We isolated and cultured ECFCs from Sprague-Dawley rats according to a previous study [10 (link)]. First, we collected peripheral blood and isolated mononuclear cells using density-gradient centrifugation with Ficoll-Plaque Plus (Amersham Pharmacia Biotech, Uppsala, Sweden). The mononuclear cells were cultured with endothelial growth medium-2 (containing 2% foetal bovine serum) (Lonza, Basel, Switzerland). The mononuclear cells were cultured in six-well plates, which were coated with human fibronectin at 37 °C for 21 days. After 21 days, the adherent cells were harvested for further characterization. The ECFCs in this study are the second generation.
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8

Mononuclear Cell Isolation for AML and CLL

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Mononuclear cells were isolated from AML patients. Mononuclear cells were isolated by density gradient centrifugation through Ficoll-Plaque Plus (Amersham Pharmacia Biotech AB, Uppsala, Sweden) at 2000 rpm for 30 minutes, followed by two washes in 1X PBS. Freeze-thawed cells were then cultured in liquid culture (DMEM, supplemented with 20% FBS). All blood and bone marrow samples from AML patients were obtained through written consent under approval of the Dana-Farber Cancer Institute Institutional Review Board. The ethics committees approved the consent procedure.
Peripheral blood mononuclear cells (PBMCs) from individuals with CLL were isolated by density centrifugation through Ficoll and frozen for each subject. Those subjects with low white counts whose CLL cell purity was expected to be < 85% underwent B cell isolation using RosetteSep. The protocol was approved by the Dana-Farber Harvard Cancer Center Institutional Review Board and all subjects signed written informed consent prior to participation.
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9

Monocyte-Derived Macrophage Differentiation

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Peripheral blood was collected from healthy volunteers from the Regional Blood Center of the Hungarian National Blood Transfusion Service (Debrecen, Hungary) with the approval of the Regional Institutional Research Ethics Committee of the University of Debrecen.
Human monocytes were separated as it was published previously (40 (link)). After density gradient centrifugation with Ficoll Plaque Plus (Amersham Biosciences; GE17-1440-02) the peripheral blood mononuclear cells (PBMCs) were isolated from the buffy coats. Positive selection of human monocytes from PBMCs was carried out using anti-CD14-conjugated MicroBeads (Miltenyi Biotec; 130-050-201) in accordance with the manufacturer’s protocol.
Isolated monocytes were suspended in RPMI 1640 (Sigma; D5671) media supplemented with 10% FBS and 5% penicillin/streptomycin/amphotericin b. In a 6-well cell culture plate 2x106 cells/ml were plated and placed in a humidified incubator at 37°C atmosphere containing 5% CO2 for 16 h before treatment. Adherent, monocyte-derived differentiating macrophages were treated with 20 ng/ml IL-4 (Peprotech; 200–04) under normoxic and hypoxic conditions with for the indicated period.
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10

Isolation and Culture of AML and CLL Cells

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Mononuclear cells were isolated from AML patients. Mononuclear cells were isolated by density gradient centrifugation through Ficoll-Plaque Plus (Amersham Pharmacia Biotech AB, Uppsala, Sweden) at 2000 rpm for 30 minutes, followed by two washes in 1X PBS. Freeze-thawed cells were then cultured in liquid culture (DMEM, supplemented with 20% FBS). All blood and bone marrow samples from AML patients were obtained through written consent under approval of the Dana Farber Cancer Institute Institutional Review Board. The ethics committees approved the consent procedure.
Peripheral blood mononuclear cells (PBMCs) from individuals with CLL were isolated by density centrifugation through Ficoll and frozen for each subject. Those subjects with low white counts whose CLL cell purity was expected to be < 85% underwent B cell isolation using RosetteSep. The protocol was approved by the Dana-Farber Harvard Cancer Center Institutional Review Board and all subjects signed written informed consent prior to participation.
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