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8 protocols using enhanced chemiluminescence reagent

1

Protein Expression Analysis by Western Blotting

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Cells for Western blotting were treated with DMSO or PEITC for 24 h. Total cell proteins were extracted using RIPA lysis buffer containing protease and phosphatase inhibitors. A BCA protein assay kit (Solarbio, China) was used to detect the protein concentrations. 30 μg total proteins were loaded on an SDS-gel, separated using SDS-PAGE, and then transferred to PVDF membranes (Merck Millipore, MA, United States of America). Membranes were subsequently blocked in 5% skimmed milk at ambient temperature for 2 h, followed by incubation with anti-GAPDH (Proteintech, #10494-1-AP), anti-p53 (abcam, #ab131442), anti-cleaved caspase 3 (CST, #9664), anti-PAb240 (Merck Millipore, #OP29L), anti-PAb1620 (Merck Millipore, #OP33), anti-p21 (CST, #2947), anti-Bcl2 (Proteintech, #12789-1-AP), anti-BAX (CST, #14796), anti-PUMA (Proteintech, #55120-1-AP), anti-MDM2 (Proteintech, #27883-1-AP), anti-CyclinB1 (abcam, #ab32053) or anti-p73 (abcam, #ab215038) overnight at 4°C. The membranes were then rinsed in TBST for 20 min and incubated for 1 h with the secondary antibody (Affinity Biosciences, Cincinnati, OH, United States) at room temperature. Signals were detected using enhanced chemiluminescence reagent (Affinity Biosciences, Cincinnati, OH, United States) and imaged using an AI600 series imager (GE Healthcare, Carlsbad, CA, United States).
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2

Osteoblast Protein Expression Analysis

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Osteoblast cells were seeded into six-well plates at a density of 1 × 106 cells/well. After stimulation was complete, cells were treated with RIPA lysis buffer (Bioteke) with 1 mm phenylmethylsulfonyl fluoride (PMSF) (Solarbio), 1% phosphatase inhibitors (Roche, Basel, Switzerland), and 1% proteinase inhibitor (Roche) for 30 min on ice. Cell lysates were resolved using 8–15% sodium dodecyl-sulfate polyacrylamide gel electrophoresis followed by transfer to polyvinylidene fluoride (PVDF) membranes. Membranes were then blocked with skim milk (Solarbio) at room temperature for 1 h and then incubated with the appropriate primary antibodies against RANKL, GAPDH, p-GP130, p-STAT3, STAT3, p-JAK2, or JAK2 (Affinity, USA) on an orbital shaker at 4°C overnight. Then, membranes were washed (5 min, three times) with tris-buffered saline with 0.1% Tween and incubated for 1 h with horseradish peroxidase-conjugated secondary antibodies diluted 1: 6,000. After washing (5 min, three times), membranes were incubated with an enhanced chemiluminescence reagent (Affinity), and the chemiluminescent signals were visualized using an iBright CL1000 imaging system (Thermo, MA, USA). The semiquantitative analysis was performed using ImageJ v1.8.0 (NIH, MD, USA).
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3

Isosteviol Modulates AMPK and ERK Pathways

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JC105 was synthesized in our laboratory (see below). Isosteviol was purchased from Sigma–Aldrich Co. Ltd. U0126 was purchased from Cell Signaling Technology. 3‐[4, 5‐dimethylthiazol‐2‐yl] 2, 5‐diphenyl‐tetrazolium bromide (MTT) was purchased from VWR Life Sciences. Dulbecco's modified Eagle's medium (DMEM), foetal bovine serum (FBS), 0.05% Trypsin‐EDTA (1×), penicillin (10 000 U/mL)‐streptomycin (10 000 µg/mL) (Pen Strep), phosphate‐buffered saline (PBS, 1×), no glucose and no sodium pyruvate DMEM were purchased from Gibco. RIPA buffer was obtained from Biosharp. Protease inhibitor (100x) was obtained from Beyotime. Bicinochoninic acid (BCA) assay kit was obtained from Beyotime. Stock concentration of JC105 (100 mM) and U0126 (10 mM) was dissolved in DMSO. MTT (5mg/ml) was dissolved in DMEM. During all treatments, the concentration of DMSO was below 0.1% (v/v). Phospho‐ERK 1/2 (Thr202/Tyr204), Total‐ERK1/2, Phospho‐DRP1 (Ser616), Total‐DRP1, Phospho‐AKT (Ser473) and Total‐AKT were obtained from Cell Signaling Technology. Phospho‐AMPKα (Thr172) and Total‐AMPK were obtained from Abcam and GAPDH was obtained from Proteintech. Anti‐rabbit IgG and anti‐mouse IgG were obtained from Proteintech. Enhanced chemiluminescence reagent was obtained from Affinity Biosciences.
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4

Western Blot Analysis of PER3 and MEK/ERK Pathway in Breast Cancer

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Breast cancer tissues or cell lines were lysed on the ice for 30 minutes and total proteins were collected using radioimmunoprecipitation (RIPA) buffer (Solarbio, China) containing phosphatase and protease inhibitors. The BCA Protein Assay Kit (Solarbio) was used for measurement of protein concentration. After heat denaturation, 30 μg of protein samples were loaded and then electrophoretically separated by 8% to 12% SDS-PAGE gel. The proteins were electrotransfered onto PVDF membranes (Millipore, USA), followed by blocking with 0.5% BSA (Solarbio) for 60 minutes. Next, the membranes were incubated with primary antibodies against PER3 (1:1000, ab177482, abcam, UK), p-ERK5 for 1 hour at room temperature. For further analysis of MEK/ERK signaling pathway, breast cancer cells were additionally treated with 50 µM of its inhibitor (PD98059, APExBIO) and activator (TPA, APExBIO, USA) for 24 hours. Finally, the protein signals were visualized by enhanced chemiluminescence reagent (Affinity Biosciences, USA).
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5

Western Blot Protein Analysis Protocol

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Cells were collected and the total protein was extracted using radioimmunoprecipitation assay buffer (NCM Biotech, China) with freshly added proteinase inhibitor. Proteins were then separated by 10–12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis and transferred to 0.22 μm PVDF membranes (Millipore, USA). The membranes were blocked with 5% skim milk and then incubated with primary antibodies overnight at 4 °C. The respective horseradish peroxidase-conjugated secondary antibodies were added, and protein signals were developed with enhanced chemiluminescence reagents (Affinity Biosciences). ChemiDox XRS Chemiluminescence imaging system (Bio-Rad, USA) was used to capture and analyse the developed images.
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6

Mitochondrial Protein Interactions in Stress Response

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Cell lysates were resolved by SDS-PAGE, transferred onto PVDF membranes, and incubated with the following primary antibodies: anti-Urocortin3 (Ucn3) (Santa Cruz Biotechnology, Dallas, Texas, USA), anti-Mfn2, anti-Idh2 (Abcam), anti-dehydrogenase E1 and transketolase domain containing 1 (Dhtkd1) (Abcam), anti-glutamate dehydrogenase 1 (Glud1) (Abcam), anti-Sirt3 (Abcam), and anti-GAPDH (Multisciences, Shanghai, China). The samples were incubated with horseradish peroxidase-conjugated secondary antibody. The blots were developed using enhanced chemiluminescence reagents (Affinity Biosciences, Cincinnati, OH, USA), and the density of the products was quantitated using the ImageJ software. For coimmunoprecipitation analysis, total protein extracts were immunoprecipitated with anti-Sirt3 antibody (ABclonal Technology, Hubei, China) and subjected to Western blot analysis by anti-Mfn2 antibody.
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7

Western Blot Analysis of Cellular Proteins

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Total protein was extracted using RIPA lysis buffer containing protease and phosphatase inhibitors (APEXBIO, Houston, TX, USA) and quantitated by BCA assay. Proteins were separated by SDS-PAGE and transferred onto polyvinylidene fluoride membranes. After blocking nonspecific binding with 5% nonfat milk in tris-buffered saline with 0.05% Tween 20 (TBST) for 1.5 hr at room temperature, the membrane was stained with an antibody against P-gp (Cat#: WL02395, 1 : 500, Wanlei, Shenyang, Liaoning, China), GR (1 : 5,000, Affinity Biosciences, Cincinnati, OH, USA), DCP1A (Decapping enzyme 1A, Cat#: 22373-1-AP, 1 : 5,000, Proteintech), PNRC2 (Proline-rich nuclear receptor coactivator 2, Cat#: A16549, 1 : 1,000, ABclonal, Wuhan, Hubei, China), UPF1 (Up-frameshift mutant 1, Cat#: 23379-1-AP, 1 : 1,000, Proteintech), Histone H3 (1 : 400, Cat#: WL0984a, Wanlei), or β-actin (Cat#: AC026, 1 : 5,000, ABclonal) at 4°C overnight. After three TBST washes, the blots were incubated with horseradish peroxidase (HRP)-conjugated goat antirabbit IgG (H + L) (Cat#: AS014, 1 : 8,000, ABclonal) for 2 hr at room temperature. The bands were visualized using the enhanced chemiluminescence reagents (Affinity) and were quantified with Image J and normalized by β-actin.
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8

Protein Expression Analysis in Lung Tissue

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Briefly, protein samples were extracted from the lung tissues, boiled for 5 min, and electrophoresed in a 12% SDS polyacrylamide gel. They were then transferred onto PVDF membranes (Millipore, Billerica, MA, USA). The membranes were then blocked with 5% skimmed milk in Tris-buffered saline–Tween 0.1% for 2 h at room temperature, and then incubated with primary antibodies against FNDC5 (Abcam, cat number: ab174833, 1 : 1000), myostatin (Abcam, cat number: ab124721, 1 : 1000), PGC-1α (Abcam, cat number: ab176328, 1 : 1000), and GAPDH (Affinity, cat number: AF7021, 1 : 5000) at the appropriate dilutions overnight at 4°C. Next, the blots were washed and incubated for 1 h at room temperature with an HRP-conjugated secondary antibody, following which they were developed using enhanced chemiluminescence reagents (Affinity, Jiangsu, China). Densitometric analysis of protein bands was performed using the Image J software (National Institutes of Health, Bethesda, MD, USA).
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