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Synergy spectrophotometer

Manufactured by Agilent Technologies
Sourced in United States

The Synergy spectrophotometer is a laboratory instrument designed to measure the absorption or transmission of light through a sample. It is capable of performing various spectroscopic analyses, including absorbance, fluorescence, and luminescence measurements, across a wide range of wavelengths. The Synergy spectrophotometer is a versatile tool used in various scientific research and analytical applications.

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18 protocols using synergy spectrophotometer

1

In Vitro Cytotoxicity Assay with DARA

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Target cells were labeled with 1 μM Calcein-AM (Life Technologies) for 30 minutes (min) at 37°C. Afterwards, cells were washed thrice with PBS, plated in triplicate at 1×104 cells/well in 96-well round bottom plates, and pre-incubated (room temperature for 15 min) with 10-fold serial dilutions of either isotype control (IgG1-b12) or DARA (range: 1 to 0.0001 μg/mL) in RPMI 1640. DARA doses for in vitro studies were previously established (20 (link)). Culture medium was added instead of mAb to determine the spontaneous calcein release and 1% Triton X-100 was used to determine the maximal calcein release. Thereafter, fresh human PBMC were added at an effector:target (E:T) ratio of 50:1, optimized in a previous report (20 (link)) and cells were incubated for 4 hours (hr) at 37°C. The plates were centrifuged, supernatant transferred into black plates (Thermo Scientific) and fluorescence was measured in a Synergy spectrophotometer (Bio-Tek) (excitation filter: 485 ± 20 nm; band-pass filter: 530 ± 20 nm). The percentage of cellular cytotoxicity was calculated using the following formula:
specific lysis=100×experimental release(RFU)spontaneous release(RFU)maximal release(RFU)spontaneous release(RFU)
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2

Cell Viability Assay with MTT

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MTT (3-[4,5-dimethylthiazol-25-yl]-2.5-dipheny ltetrazolium bromide; Sigma) was added to the medium to a final concentration of 0.5 mg/mL and incubated for 4 hours at 37°C. The medium was then removed and 0.2 mL DMSO was added. Absorbance was measured at 590 nm by using a Synergy spectrophotometer (Biotek). Readings were taken 0, 24, 48, 72 and 96 hours after cell treatment.
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3

Quantification of Tumor PGE2 Levels

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PGE2 content was determined by ELISA using a PGE2 Assay Kit (KGE004B, R&D Systems) according to the manufacturer’s instructions. Frozen tumor samples were homogenized in the supplied buffer, and PGE2 content was assayed and normalized to protein using the BCA Kit. The ELISA plate was read at 450 nm on a BioTek Synergy spectrophotometer and data were analyzed using Gen5 2.00 software.
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4

Quantifying Total Phenolic Content

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The total phenolic content (TPC) was measured according to the Folin-Ciocalteau procedure [62 (link)]. Samples (0.25 and 0.125 mg) were mixed with Na2CO3 (2.25 mL; 7.5% w/v) and Folin-Ciocalteu reagent (0.25 mL) and allowed to stand for 3 h at room temperature. The absorbance was read at 765 nm using a Synergy spectrophotometer (Biotek, Winooski, VT, USA). Data were expressed as milligrams of gallic acid equivalents (GAEs) per g of extract. To this purpose, a gallic acid calibration curve (y = 0.0247x − 0.0063; R2 = 0.9998) was built up in the range 0.78–25 µg/mL (final concentration levels).
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5

Urinary Creatinine Quantification Protocol

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Urinary creatinine concentrations were measured using a Diagnostic Chemicals Limited Creatinine-S kit using a protocol optimized for absorbance measurement using a BioTek Synergy spectrophotometer at 490 nm.
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6

Quantifying Soluble Adhesion Molecules

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An enzyme-linked immunosorbent assay was used to measure concentration of soluble intercellular adhesion molecule-1 (sICAM-1) (R&D Systems, cat. no DY720-05) and von-Willebrand factor (vWF) (R&D Systems, cat. no DY2764-05) from perfusate samples. Standards for each plate were used to generate a curve. Perfusates were diluted to 1:1000 for sICAM-1 and used neat for vWF. Standards and perfusate samples were applied in technical duplicate. Optical density of plates was assessed through the Synergy spectrophotometer and Gen5 plate reading software (BioTek) at 450 nm. Final concentration values were adjusted to TLC.
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7

Quantifying Total Phenolic Content

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The total phenol content (TPC) was determined according to the Folin-Ciocalteau procedure [29 (link)]. Samples (0.25 mg and 0.125 mg) were mixed with 2.25 mL of Na2CO3 (2.25 mL; 7.5% w/v) and 0.25 mL of Folin-Ciocalteu reagent. The tubes were mixed and allowed to stand for 3 h at room temperature (T = 25 °C), in the dark. The absorbance was read at 765 nm using a Synergy spectrophotometer (Biotek, Winooski, VT, USA). Data were expressed as milligrams of gallic acid equivalents (GAEs) per g of extract. To this purpose, a gallic acid calibration curve ( y=0.0247x0.0063 ; R2 = 0.9998) was built up in the range 0.78–25 µg/mL (final concentration levels).
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8

Quantification of Condensed Tannins

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The total condensed tannin (TCT) content was determined according to Butanol-HCl method [32 (link)], with some modifications. The samples (0.1 mL) were dissolved in 3 mL of the Butanol-HCl reagent (95:5, v:v; HCl concentrated 37%) and 0.1 mL of the ferric reagent (2% w/v in 2 N HCl) was added. The tubes were mixed and put in a heating block adjusted at 97 °C for 60 min. The absorbance was read at 550 nm against the blank (water) using a Synergy spectrophotometer (Biotek, Winooski, VT, USA). Data were expressed as milligrams of cyanin equivalents (CYEs) per g of extract. To this purpose, a cyanin calibration curve ( y=0.0339x0.1202 ; R2 = 0.9946) was built up in the range 1.95–62.5 µg/mL (final concentration levels).
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9

Quantifying Total and Surface Phenols

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Total phenol content (TPC) was determined according to the Folin–Ciocalteau method, as well as the surface phenol content. Briefly, for TPC, 2.5 and 5.0 mg of FE-MD were mixed with 2.25 mL of sodium carbonate (7.5% w/v) and 0.25 mL of Folin–Ciocalteau reagent. The mixtures were shaken for 3 h in the dark at room temperature. The absorbance was read at 765 nm using a Synergy spectrophotometer (Biotek, Winooski, VT, USA). Three replicates of three aliquots (n = 3) of each sample (in total, 3 × 3 measurements) were analyzed. A calibration curve of gallic acid was built up (0.78–50 µg/mL) and data were expressed as mg of gallic acid equivalents (GAEs) per g of sample (mean ± SD). For surface phenol content, FE-MD powder was mixed with ethyl acetate (1.0 mL), vortexed for 60 s, and centrifuged at 3000× g for 10 min. The surface phenol content was measured following the same Folin–Ciocalteau method. The embedded phenol content was calculated by subtracting the surface phenol content from the TPC value [48 (link)].
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10

Candida Species Growth and Stress Assays

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Candida species were grown as described above, washed, and diluted to 105 cells/mL in yeast nitrogen base (YNB) medium containing 0.5% oyster glycogen (Sigma-Aldrich, G8751), bovine liver glycogen (Sigma-Aldrich, G0885), or glucose. 200 μL were transferred to the wells of a microtiter plate. OD600 readings were captured at 60 min intervals, using a BioTek Synergy spectrophotometer with an incubation temperature of 30°C and orbital shaking at 200 rpm. The experiments were repeated in technical quadruplicate and biological triplicate. The data are expressed as the mean ± standard error of the mean (SEM). For the stress tolerance and phenotypic assays, C. albicans overnight cultures were washed twice with PBS and adjusted to 2 × 107 cells/mL. Serial dilutions of cells were spotted (5 μL) onto YP agar plates containing dextrose (or other carbon sources, as indicated) under the following conditions: temperature (30°C, 37°C, or 42°C), pH (3.5 and 8.5), peroxide stress (5 mM or 25 mM H2O2), osmotic stress (1 M sorbitol), ionic stress (100 or 500 mM CaCl2, 1.5 M NaCl), metal ion stress (10 mM MnCl2), cell wall stress (25 μg/mL Congo red, 0.05% sodium dodecyl sulfate), or alternative carbon sources (3% glycerol or 3% ethanol). Unless indicated, the plates were incubated at 30°C for 48 h, prior to the acquisition of images using a Gel Doc XR Imaging System (Bio-Rad).
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