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258 protocols using dabco

1

Nuclear Condensation Visualization via Hoechst33342

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Hoechst33342 staining was used to visualize nuclear condensation. Cells plated on coverslips were fixed with 4% paraformaldehyde (w/v) in PBS at room temperature for 10 min. Fixed cells were then incubated with Hoechst33342 (500 ng/mL in PBS) at room temperature for 20 min. Coverslips were mounted using DABCO solution (0.5% DABCO (D27802, Merck KGaA), 90% glycerol in 10 mM Tris/HCl (pH 7.4)). Fluorescent images were obtained using a BZ-X700 fluorescence microscope (KEYENCE CORPORATION, Osaka, Japan).
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2

Synthesis of Thermoplastic Polyurethane

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Thermoplastic polyurethane was prepared using two-step method, also called prepolymer method. In the first step (Figure 1), urethane prepolymer was synthesized using 4,4′-diphenylmethane diisocyanate (MDI, BorsodChem, Kazincbarcika, Hungary) and ester-based polyol, i.e., α,ω-oligo(ethylene-butylene adipate)diol (POLIOS 55/20, Purinova, Bydgoszcz, Poland), which is characterized by average molecular weight around 2000 g mol−1, hydroxyl number 58 mg KOH g−1 and acid number 0.3 mg KOH g−1. The synthesis of prepolymer was carried out at 80 °C for 2 h (under the vacuum) and resulted polymer was characterized by the amount of unreacted isocyanate groups equal 7.2 wt%.
In the next step (Figure 2) prepolymer was reacted with chain extender, i.e., 1,4-butanediol (Brenntag, Kędzierzyn-Koźle, Poland). The reaction was catalyzed using 1,4-diazabicyclo[2.2.2] octane (DABCO, Sigma Aldrich, Saint Louis, MO, USA), which was previously dissolved in the chain extender (to obtain 0.3 wt% solution of DABCO in BDO). The molar ratio of [NCO]/[OH] groups during prepolymer chains extending step was equal 0.95). Finally, obtained material was seasoned at 100 °C for 24 h.
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3

Synthesis of Zn-based Metal-Organic Framework

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Zn(NO3)2·6H2O (0.030 g, 0.1 mmol, Aldrich), 3,3′-PDBA (0.032 g, 0.1 mmol), and 1,4-diazabicyclo[2,2,2]octane (DABCO) (0.006 g, 0.05 mmol, Aldrich) were dissolved in 5 mL of DMF and heated at 120 °C for 4 d. Transparent colorless block crystals were retrieved by filtration and washed with DMF. The crystals were dried in air (~ 0.024 g). High-quality block crystals were directly chosen for single-crystal X-ray crystallography from the as-prepared sample. Analytical analysis calculated for C51H54N9O11Zn2 (1099.81): C 55.70, H 4.95, N 11.46; found C 55.27, H 4.40, N 10.67%.
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4

Immunostaining of Parasitic Samples

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Parasites were smeared onto glass slides and fixed in 10% Methanol / 90% Aceton, air dried and stored at -20 °C. The slide was rehydrated in PBS for 10 min and subsequently blocked in 1% BSA in PBS for 30 min. The GFP-antibody (Additional File 6: Table S5) was then applied for 2 h in blocking solution. After washing the slides 3 times for 5 min in PBS, the slide was incubated with the secondary anti-rabbit Alexa-488 antibody and Hoechst 33,342 (Additional File 6: Table S5) for 2 h in the dark. Finally, unbound antibody was washed off again 3 times for 5 min in PBS and the slides were mounted over night with Mowiol (Merck Millipore) including DABCO (Diazabicyclooctan Sigma Aldrich). The slides were imaged using a Zeiss Axio Observer and analysed with Zeiss ZEN Pro software 3.0.
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5

Synthesis of Inorganic Microporous Materials

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Colloidal silica (Ludox HS-40 or Ludox AS-40, Dupont), aluminum hydroxide (Al(OH3)•H 2O, 99%, Aldrich), aluminum tri-sec-butoxide (Al[O(s-Bu)]3, 97%, Aldrich), alkali metal hydroxides (LiOH, 98%; NaOH, 50%; KOH, 45%; RbOH, 50%; CsOH, 50%, Aldrich), alkali metal nitrates (LiNO3, NaNO3, KNO3, RbNO3, CsNO3, 99%, Aldrich), 1,4diazabicyclo[2.2.2]octane (DABCO, 99%, Aldrich), alkyl (methyl, ethyl, propyl, and butyl) iodides (96-99%, Aldrich), tetramethylammonium hydroxide (TMAOH, 35%, Aldrich), tetraethylammonium hydroxide (TEAOH, 35%, Aldrich), tetrapropylammonium hydroxide (TPAOH, 35%, Aldrich), tetrabutylammonium hydroxide (TBAOH, 35%, Aldrich), and organic structure-directing agents (OSDAs) prepared in this work.
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6

Photosensitizer Synthesis and Characterization

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Anthracene, oleic acid, linoleic acid, acetonitrile, methylene blue (MB), DABCO, BHT, BHA, TBHQ, 2-nitrobenzaldehyde, 3-nitrobenzaldehyde, and 4-nitrobenzaldehyde were purchased from Merck or Sigma-Aldrich (Vienna, Austria) and Alfa Aesar (Karlsruhe, Germany) without further purification. 5,10,15,20-Tetrakis(tolyl)porphyrin (H2TTP) and its ferric complex TTPFeCl were synthesized according to the literature [13 (link),14 (link)].
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7

Immunofluorescent Detection of GFP-expressing Babesia divergens

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GFP-expressing B. divergens in vitro cultures were smeared, air-dried and fixed with 4% paraformaldehyde and 0.075% glutaraldehyde in PBS for 30 min at RT on Superfrost Plus™ Adhesion Microscope Slides (Thermo Fisher Scientific). After fixation, the samples were washed with PBS (3 × 5 min) and incubated with 0.01% Triton X-100 (Merck) diluted PBS for 30 min at RT to permeabilize cell membranes. Anti-GFP Polyclonal Antibody conjugated with Alexa Fluor™ 488 (Thermofisher) was diluted 100× in 0.01% Triton X-100 and applied to samples for 1 hour at RT. Subsequently, the samples were washed in PBS (3 × 5 min) and stained with 300 nM DAPI diluted in PBS for 10 min at RT. After another round of washing with PBS (3 × 5 minutes), the samples were mounted in DABCO (Merck). GFP signal was examined by BX53F fluorescence microscope (Olympus) and processed in Fiji (ImageJ) software.
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8

Visualizing ZnPc-EV Cellular Localization

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The location of the ZnPc-EVs inside cells was investigated by seeding 3000 MC38 cells in an 8-chamber polystyrene vessel tissue culture-treated glass slides (Corning) and allowing them to attach overnight. This was followed by incubation for 6 and 24 h with the ZnPc-EVs with a concentration calibrated at 4 µM ZnPc. After this time, the cells were washed 3 times in PBS and fixed in PBS containing 1% formalin (J.T. Baker) at 4 °C for 20 min. The cells were then washed three times in PBS and stained with 0.25 µM DAPI (Sigma), after which the coverslips were mounted on the glass slides using Mowiol mounting medium (Sigma-Aldrich) with 2.5% w/v DABCO (Merck) and sealed with nail polish. The slides were then imaged on a Leica SP8 fluorescence microscope.
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9

Spectroscopic Analysis of Organic Compounds

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IR spectra were recorded on a Shimadzu FTIR spectrophotometer and UV spectra were recorded in dry CHCl3 with Shimadzu visible spectrophotometer. 1H NMR and 13C NMR spectra were recorded on a Bruker DPX-400 spectrophotometer (400 MHz) using tetramethylsilane as internal reference. Analytical thin-layer chromatography (TLC) was performed on pre-coated silica gel 60 F-254 (E. Merck). Column chromatography was performed on silica gel (60–120 mesh). DABCO (1, 4-Diazabicyclo [2. 2. 2] octane), acrylates, aldehydes and other reagents were purchased from E. Merck (Germany) and Fluka (Switzerland).
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10

Immunohistochemical Analysis of c-Fos in Dorsal DG

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Ninety min after the retention test, five animals from each experimental group (saline and propranolol), were randomly selected and transcardially perfused with ice-cold PBS, followed by 4% paraformaldehyde (Sigma-Aldrich Chemie N.V., The Netherlands). Forty micrometer coronal sections of the hippocampus were collected serially using a freezing microtome (Leica, Wetzlar, Germany; SM 2000R) and stored in PBS with 0.02% NaN3 at 4°C until further use. Approximately 8–10 free-floating sections across the rostrocaudal axis of the dorsal DG were used for immunohistochemical stainings (described in Rao-Ruiz et al., 2019 (link)) using a primary antibody against the Immediate Early Gene c-Fos (1:500, sc-52, Santa Cruz, Germany) and a corresponding Alexa-conjugated secondary antibody (1:400, anti-rabbit Alexa 488, Life Technologies, The Netherlands). Nuclear staining was performed using DAPI (300 nmol/L, Thermo Fisher Scientific, The Netherlands). Sections were mounted on slides and coverslipped using a polyvinyl alcohol mounting medium with DABCO®, antifading (Merck KGaA, Germany).
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