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11 protocols using cd45ro pe cy7

1

Phenotypic Analysis of Anti-CD123 CAR T Cells

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Anti-CD123 CAR T cells were harvested prior to and post lentiviral transduction and phenotypically analyzed. Cells were washed twice with 1× PBS supplemented with 2 mM EDTA, 2% FCS, and 5% sodium azide, resuspended in 100 µL, and stained with live dead aqua viability dye-V500 (1:500), CD3-PerCPCy5.5, CD8-APC, CD27-APC-ef780, CD45RO-PeCy7 (BD Biosciences) (1:100) for 30 min on ice, in the dark. Cells were washed twice and resuspended in a final volume of 200 µL prior to flow cytometric analysis. Unstained and fluorescence minus one (FMO) controls were used to identify gating boundaries.
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2

Comprehensive Immune Cell Profiling by Flow Cytometry

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Peripheral blood mononuclear cells (PBMC) were isolated by density centrifugation with Lymphoprep (Axis-Shield). PBMC or whole blood samples were stained with the following fluorochrome-conjugated monoclonal antibodies: CD3-efluor605, CD4-efluor450, CD27-APC-efluor780, HLA-DR-efluor780, CD45RA-efluor605, FOXP3-PE (eBioscience), CD4-APC-H7, CD8-Percp, CD8-PE-Cy7, CD31-AF647, CD45RO-FITC, CD45RO-PE-Cy7, CCR7-PE-Cy7, Ki-67-Percp-cy5.5, CTLA-4-BV421 (BD Biosciences), PD-1-PE, CD28-AF700 (Biolegend), and CD161-PE (Miltenyi Biotec). Intracellular staining for FOXP3, Helios, Ki-67, and CTLA-4 was performed after cells were permeabilized with a FOXP3 staining buffer set according to instructions of the manufacturer (eBioscience). Whole blood samples were treated with BD lysing solution according to the instructions of the manufacturer (BD Biosciences). Stained samples were analyzed on a LSR-II flow cytometer (BD Biosciences). Analysis was performed with Kaluza Flow Analysis Software (Beckman Coulter). Absolute numbers of CD3+ T cells, CD4+ T cells, CD8+ T cells, B cells, and NK cells were determined according to the MultiTest TruCount method (BD Biosciences), as described by the manufacturer. TruCount samples were measured on a FACSCanto-II (BD Biosciences) and analyzed with FACSCanto Clinical Software (BD Biosciences).
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3

Monocyte NF-κB Signaling Dynamics

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Total PBMCs were rested for 1 hour in RPMI media without FBS after isolation. Monocytes were plated overnight in RPMI media containing 5% FBS, L-glutamine, Non-essential amino acids, Sodium Pyruvate, and HEPES. Monocytes were washed 2x with RPMI and rested for 1 hour with RPMI without FBS prior to stimulation. Stimulation was performed with 50 ng/ml TNFα (R&D Systems) or phorbol 12-myristate 13-acetate (PMA, Sigma Aldrich, 500 ng/ml). Cells were fixed at 15, 30, or 45 minutes with BD Fixation Buffer (BD Biosciences), washed 2x with PBS, and permeabilized with ice-cold BD Perm Buffer III (BD Biosciences). Cells were permeabilized overnight at −80°C. After washing, the cells were stained for CD4 PE, CD45RA AF700, CD45RO PE-Cy7, phospho p65 NFκB (pS529) (BD Biosciences), and IκBα A488 (Cell Signaling Technologies). Flow cytometry was performed on a BD LSRII Fortessa (BD Biosciences). Analysis was performed using Flowjo software (TreeStar).
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4

Monitoring T Cell Proliferation and Subset Analysis

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PBMCs were stimulated with anti-CD3 mAb (OKT3) plus CD28, or mixed in a 1:1 ratio with irradiated allogeneic DCs in mixed lymphocyte reaction (MLR) as described (18 (link)). To determine cell proliferation, T cells were labeled with CFSE and cell division was monitored by using the FITC channel in a FACScanto II flow cytometer (BD Biosciences). Aliquots of PBMCs were analyzed by 7-color flow cytometry using a panel of surface molecule specific antibodies: CD4-APC (5 ug/ml), CD8-Pacific Blue (5 ug/ml), CD62L-APC/Cy7 (5 ug/ml), CD45RA-PE/Cy5 (2.5 ug/ml) and CD45RO-PE/Cy7 (2.5 ug/ml) (BD Pharmingen, San Jose, CA). Analyses of CD8+ T cell subsets were determined by assessing CD45RA and CD62L surface markers.
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5

Multicolor Flow Cytometry Analysis

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The fluorochrome-labeled monoclonal antibodies used in this study included: antibodies against CD3-Peridinin Chlorophyll (Percp, Miltenyi Biotec), CD8-APCcy (Biolegend), CD4-phycoerytherin (PE, BD Pharmingen), CD27-APCcy7 (BD Pharmingen), IgD-PEcy7 (Biolegend, San Diego, CA), CD40L-PE (BD Pharmingen), CD19- fluorescein isothiocyanate (FITC, BD Pharmingen), CD80-allophycocyanin (APC, BD Pharmingen), PD1-PE (BD Pharmingen), CD45RO-PEcy7 (BD Pharmingen), ki67-FITC (BD Pharmingen), IFN-γ-FITC (BD Pharmingen), CD38-APC, annexin V-FITC, and isotype control Abs (BD Pharmingen). No annexin V staining was used as a control for gating strategy. All others were gated based on isotypes. Cells were identified by their forward (FSC) and side scatter (SSC) characteristics and were analyzed with a Guava 8HT flow cytometer (Millipore, Billerica, MA).
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6

Isolation and Characterization of CD8+ T Cell Subsets

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For the eight elderly donors, PBMCs were isolated from fresh blood samples using density gradient centrifugation with Ficoll (GE Healthcare). CD3+ T cells were enriched from PBMCs by immunomagnetic selection using CD3 MicroBeads (Miltenyi Biotec, Auburn, CA). Cells were stained in the dark for 15 min with the following anti-human Abs: CD45RO PE-Cy7 (BD Biosciences, San Jose, CA), CD3 Alexa Fluor 700 (BD Biosciences), CD62L-PE (BD Biosciences), CD45RA-allophycocyanin (BD Biosciences), CD8-Pacific Blue (BD Biosciences), CD4 allophycocyanin-Cy7 (BD Biosciences), and LIVE/DEAD Aqua fluorescent reactive dye (Invitrogen, Grand Island, NY).
CD8+ T cell subsets were isolated using the BD FACSAria cell-sorting system (BD Biosciences), including CD8+CD45RACD45RO+ (for CD8+ memory), CD8+CD45RA+CD45ROCD62Lhi (CD8+ naive), and CD8+CD45RA+CD62Llo/− (CD8+ TEMRA). FlowJo (TreeStar, Ashland, OR) analysis was used to determine the proportions of the different subsets as a fraction of total CD8+ T cells.
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7

Isolation and Characterization of PBMCs

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Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll-Hypaque density gradient centrifugation. For surface staining, PBMCs were stained for 30 min in the dark at 4°C with the monoclonal antibodies PE-CF594 mouse anti-human CD4 (BD Biosciences, San Diego, CA, USA), PE anti-human CD25 (BioLegend, San Diego, CA, USA), FITC anti-human CD161 (BioLegend), 7AAD (BD Pharmingen, San Diego, CA, USA), and CD45RO PE-Cy7 (BD Biosciences) or with FITC Mouse IgG1 κ isotype control (BioLegend) and Mouse IgG1 κ isotype control PE (eBioscience, San Diego, CA, USA). For intracellular staining of cytokines, incubate PBMCs in RPMI 1640 medium (Gibco, Life Technologies, Shanghai, China) in 5% CO2 at 37°C, then stimulate these cells for 5 h, PBMCs were stimulated for 5 h with 50 ng/mL phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich, Steinheim, Germany) and 1 μg/mL ionomycin (BD Pharmingen) in the presence of 10 μg/mL Brefeldin-A (BFA; BioLegend) and subsequently fixed and permeabilized by Foxp3/Transcription Factor Staining Buffer Set (eBioscience). Then the cells were stained for 30 min away from the light at 4°C with anti-human IL-17A APC (eBioscience) or Mouse IgG1 κ Isotype Control APC (eBioscience).
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8

Isolation and Characterization of T-Cell Subsets

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By use of an AriaII FACS sorter (Becton Dickinson, BD, Franklin Lakes, NJ), pure CD28POS cells (purity 98% [95–100%]) were isolated. PBMCs were stained with CD3 Brilliant Violet 510 (BioLegend, San Diego, CA), CD4 Pacific Blue (BD, Franklin Lakes, NJ), CD8 APC-Cy7 (BD Pharm, San Diego, CA), CD28 APC (BD), and the viability dye 7-AAD PerCP (BD). Pure memory subsets (≥95% pure) were isolated using CD3 Brilliant Violet 510 (BioLegend), CD45RO PE-Cy7 (BD) and CCR7 PE (BD): naïve (TN cells: CCR7+CD45RO-), central-memory (TCM cells: CCR7+, CD45RO+), effector-memory (TEM cells: CCR7-, CD45RO+), and end-stage terminally-differentiated EMRA (TEMRA cells: CCR7-CD45RO-) T-cells.
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9

Comprehensive T-cell Immunophenotyping

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Isolated mononuclear cells or whole blood samples were stained with the following fluorochrome-conjugated monoclonal antibodies: CD4-PcP, CD8-APC-H7, CD31-PE, CD45RA-FITC, CD25-PE, CD45RO-PE-Cy7, CD45RO-FITC, CCR7-PcP-Cy5.5, TCRγδ-BV421, pSTAT5-PE-Cy7, Ki-67-PcP-Cy5.5, Tbet-PE, CXCR3-PE-Cy5, CD69-APC-Cy7, CCR4-PE-Cy7, CD5-APC, CRTH2-PE, GATA3-APC, CD5-APC (all BD), CD4-ECD, CD4-PC7, CD69-PC5, CD69-ECD, Beta Mark TCR V β kit (all Beckman Coulter, Woerden, The Netherlands), CD122-PE, CD132-PE, CCR6-PcP-Cy5.5, IL-2-AF700, IL-4-PE, IFN-γ-PcP-Cy5.5, FOXP3-AF647, Helios-AF488 (all Biolegend, Uithoorn, The Netherlands), CD4-ef450, CD25-APC, CD25-PE, CD45RA-PE, CD45RA-ef605, HLA-DR-APC-ef780, IL-17-AF488, CD27-AF700, CD28-PcP-cy5.5 (all eBioscience, Vienna, Austria). In case of whole blood staining, samples were lysed with BD FACS lysing solution. Samples were measured on a LSR-II (BD) or FC500 (Beckman Coulter) and analyzed with Kaluza Analysis Software (Beckman Coulter). Absolute numbers of CD4+ and CD8+ T cells were determined according to the BD MultiTest TruCount method, as described by the manufacturer. TruCount measurements were taken on a FACS Canto-II (BD) and analyzed with FACSCanto Clinical Software (BD).
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10

Comprehensive Flow Cytometry Immunophenotyping

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Different immune cell subpopulations were immunophenotyped with flow cytometry from fresh PB samples with 6 panels of different cell-surface markers, including the following immune checkpoint receptors and cytotoxicity and migration markers: CD3-PerCP-Cy5.5 (BD, catalog 332771), CD4-PE-Cy7 (BD, catalog 560649), CD45-APC-H7 (BD, catalog 560178), CD8-BV510 (BD, 563919), CD56-BV421 (BD, 562751), CXCR1-FITC (BioLegend, catalog 341606), CD16-PE (BD, 561313), TCR γδ-APC (BD, catalog 555718), PD1-FITC (BD, catalog 557860), LAG3-PE (BD, catalog 125209), ICOS-PE-Cy7 (eBioscience, catalog 25-9948-42), CTLA-4–APC (BD, catalog 560938), HLA-DR-BB515 (BD, catalog 560938), CD27-PE (BD, catalog 555441), CD25-PE-Cy7 (BD, catalog 561405), CD11b-APC (BD, catalog 550019), NKG2C-AF488 (R&D Systems, catalog FAB138G), CD161-PE (BD, catalog 556081), NKG2D-PE-Cy7 (BD, catalog 562365), NKG2A-APC (R&D Systems, catalog FAB1059A), DNAM-BB515 (BD, catalog 565152), CD57-PE (BD, catalog 560844), NKp46-PE-Cy7 (BD, catalog 562101), NKp30-AF647 (BD, 558408), CXCR3-AF488 (BD, catalog 561730), CCR7-PE (R&D Systems, catalog FAB197P), CD45RO-PE-Cy7 (BD, catalog 560608), and CXCR4-APC (BD, catalog 560936). CD45+ lymphocytes were acquired with the BD FACS Verse, and the data were analyzed with FlowJo, version 10.4. The results are shown in Supplemental Table 1.
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