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7 protocols using β tubulin 3 antibody

1

Antibodies and Reagents for Cell Signaling

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Mouse monoclonal antibodies against GAPDH and actin, rabbit polyclonal antibodies against PTEN, PERK, phosphorylated elF2 and CHOP were from Cell Signaling Technologies. β-tubulin III antibody, thapsigargin (TP) and sodium phenylbutyrate (4-PBA) were from Sigma-Aldrich. Anti-Phosphorylated PERK antibody was obtained from Santa Cruz Biotechnology. Aβ1−42 was purchased from China Peptide. The mimic or inhibitors of miR-200 family and siPTEN/control siRNAs were synthesized by Life Technologies with sequences shown in Table 1.
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2

Immunocytochemistry of Neural Explants

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Coverslips that contained the explants were rinsed three times with phosphate-buffered saline (PBS). The coverslips were fixed with 4% paraformaldehyde at room temperature for 20 min, and 0.1% Triton X-100 was added to them for 1 h. Normal goat serum was utilized to dilute primary antibodies at the following dilutions: β-tubulin III antibody (1:1000, Sigma-Aldrich), MAP2 antibody (1:200, Boster, Wuhan, China), and ApoE antibody (1:100, Santa Cruz, Dallas, TX, USA). Coverslips were incubated with primary antibodies overnight at 4°C. FITC (green) and Alexa 555 (red) were diluted with PBS and used for secondary antibodies. Coverslips with secondary antibodies were incubated for 30 min at 37°C in a water bath. The nuclei were stained by 4’,6-diamidino-2-phenylindole (DAPI, Beyotime). The excess DAPI was washed off, and the coverslips were mounted with 50% glycerol. In addition, phalloidin (1:100, FITC labeled, SigmaAldrich) was used to dye F-actin in growth cones. A fluorescence microscope (NIKON TE2000-U, Tokyo, Japan) was used to capture all images.
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3

Differentiation of Neural Cells

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After passage, the cells were seeded on cover slips which processed by 100 μg/mL poly-L-lysine and incubated with differentiating medium which contains 100 × N2 supplement, 100 × B27 supplement and 1% fetal bovine serum (FBS, Gibco, Carlsbad, CA, USA) in DMEM/F12 (without b-FGF). At the end of 7 day cultures, cells were harvested for differentiation analysis. A total of 5–7 randomly selected images were taken in each well, and the number of cells expressing β-tubulin III, GFAP tested by β-tubulin III antibody (Sigma-Aldrich Inc. St. Louis, MO, USA) and GFAP antibody (Sigma-Aldrich Inc. St. Louis, MO, USA) were counted (at least 200 cells each test case), and data were collected from at least three independent experiments.
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4

Ketamine Impact on NSC Fate

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The cells were assigned to the following groups: control group, ketamine group, and 17β-estradiol group. No drug treatment was added to the control group. NSCs in the ketamine group were exposed to 100 μM ketamine for 24 h. NSCs in the 17β-estradiol group were pretreated with 17β-estradiol (100 nM) for 30 min and then 100 μM of ketamine was added to the culture medium for 24 h. For proliferative analysis, NSCs were seeded on cover slips which were pre-coated with 100 μg/mL poly-L-lysine and incubated with BrdU for the last 4 h. Following being fixed with 4% paraformaldehyde, the cells were stained with BrdU antibody (1:200, Abcam, United Kingdom) and DAPI. As for neuronal differentiation analysis, after being exposed to ketamine with or without 17β-estradiol for 24 h, the cells were seeded on cover slips which were pre-coated with 100 μg/mL poly-L-lysine and incubated with differentiating medium for 7 days, then the cells were harvested for immunohistochemical staining. The cells were labeled with β-tubulin III antibody (1:500; Sigma-Aldrich Inc. St. Louis, MO, United States). Briefly, 5–7 randomly selected fields were captured in each coverslip, and the numbers of β-tubulin III-positive cells were counted (at least 200 cells per test case). Data were collected from three independent experiments.
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5

Neuronal Regeneration and Apoptosis Assay

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Harvested L4, L5 DRGs, and sciatic nerve (normal or proximal and distal to transection) were probed for Rb (1:200, Santa Cruz Biotechnology, sc-50), and double labelled with S100β (1:200, Sigma), or with NF-200 (1:400, Rabbit polyclonal, Sigma Aldrich) for 48 hours, then rinsed three times in PBS. Secondary antibodies were sheep antimouse IgG CY3 conjugate (1:100, Sigma) and Alexa Fluor 488 goat anti-rabbit IgG (H+L) conjugate (1:500, Cedarlane, Horby, Canada). Dissociated DRG cultures were labelled with Rb (1:200), PPARγ (1:50, Mouse monoclonal, Cell Signalling), NF200 (1:500), activated caspase 3 (1:200); phospho-H2A.X (1:200); β tubulin III (1:100). Antibodies to activated caspase 3 and phosphohistone H2A.X (Ser 139) were purchased from Trevigen and Millipore respectively. β tubulin III antibody was purchased from Sigma.
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6

Neurite Length Analysis of Roscovitine-Treated Neurons

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Roscovitine-treated and untreated neurons were washed with 1× Phosphate-buffered saline (PBS) and fixed with 4% paraformaldehyde (Invitrogen Life Technologies), stained with β-tubulin III antibody (1:200 dilution; Sigma-Aldrich Co.) in 1× PBS containing 10% goat serum and 0.3% Triton X-100 and Cy3-conjugated anti-mouse secondary antibody (1:200 dilution; Sigma-Aldrich Co.) in 1× PBS containing 10% goat serum and 0.3% Triton X-100. Images were captured under a Zeiss fluorescence microscope. Neurite length was analyzed by the MetaXpress software and by an observer blinded to their condition (Molecular Devices, Sunnyvale, CA, USA). Between 40 and 60 neurons were analyzed per condition. Three to four rats per condition were routinely used. Graph Pad Prism was used for statistical analysis. Student’s t-tests were carried out with the statistical significance set at p ≤ 0.05.
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7

Neuroinflammation and Neurodegeneration Assay

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Cell culture reagents were from PAA. Purified LTA was from Invivogen; LPS, apyrase and reactive blue 2 (RB2), were from Sigma, authentic peroxynitrite was from Cayman, 3-morpholinosydnonimine (SIN-1) was from Invitrogen, MRS2578, MRS2693, and UDP were from Tocris, Amyloid β1-42 peptide was from EZBiolab, Annexin V was from BioVision. Tumor necrosis factor-α and interleukin-1β Quantikine Elisa Kits were from R&D Systems. NeuN antibody was from Millipore, β-tubulin III antibody was from Sigma, anti-cleaved caspase-3 antibody was from Cell Signaling Technology, Alexa Fluor 488-labeled Griffonia simplicifolia isolectin B4 and secondary goat-anti-mouse-Alexa Fluor 488 antibody were from Invitrogen, secondary goat anti-mouse-Cy3 and goat anti-rabbit-Cy3 antibodies were from Jackson ImmunoResearch Laboratories. All other materials were purchased from Sigma.
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