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16 protocols using ab37647

1

Isolation and Analysis of esRAGE-HMGB1 Complex

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HEK293D cells were cultured and transfected using Lipofectamine 2000 (Thermo Fisher Scientific). The supernatant was collected and esRAGE in the supernatant was confirmed by ELISA (B-Bridge International K1009-1) and Western blot. The supernatant containing esRAGE was mixed in equal parts (100 μl) with recombinant HMGB1 (0.1 mg/ml, Sigma H4652) and incubated for 1.5 hours at 37 °C. Using Pierce Co-immunoprecipitation Kit (Thermo Fisher 26149), the esRAGE-HMGB1 complex is then pulled down with anti-RAGE (Abcam ab37647) antibody coupled resins.
The co-immunoprecipitated proteins were then separated by SDS-PAGE and transferred to nitrocellulose membranes (Bio-RAD). The membranes were blocked and then incubated either with anti-HMGB1 (Abnova H00003146-M08 or Abcam ab18256) or anti-RAGE (Abcam ab37647) antibodies overnight, washed and incubated with horseradish peroxidase-conjugated antibody. Bands were visualized by chemiDoc MP imaging system using enhanced chemiluminescence (Amersham Biosciences, Piscataway, NJ).
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2

Immunofluorescence Staining of Tumor and Animal Tissues

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Immunofluorescence staining was performed as previously described (Wu et al., 2019b (link)). Briefly, tumor and animal tissues were fixed with paraformaldehyde, dehydrated, and cleared with a gradient of alcohol solutions and xylene, respectively. Consecutively, tissues were embedded in paraffin. Paraffin-embedded tissues were sliced continuously (3.5°C) using a HistoCore AUTOCUT system (Leica), mounted, dewaxed, and rehydrated. For antigen retrieval, sections (3–4 μm) were pretreated in a microwave oven with citric acid buffer (pH 6.0) for 12 min and then cooled to 25°C in deionized water. After washing with PBS for 5 min, sections were incubated with 5% normal goat and donkey serum at 37°C for 1 h at 25°C and then incubated with the primary antibody (1:800, ab37647, Abcam) at 4°C overnight. After washing at least thrice with PBS, sections were incubated with the following secondary antibodies: Alexa 633-conjugated donkey anti-rat antibody (1:500, Invitrogen), Alexa 596-conjugated goat anti-rabbit (1:500, Invitrogen), and Alexa 488-conjugated goat anti-mouse antibody (1:250, Invitrogen) for 1 h at 25°C. Afterward, cells were extensively washed with PBS, and their nuclei were labeled using 4′,6-diamidino-2-phenylindole (DAPI). Free-floating sections with positive immunofluorescence staining were captured and analyzed using a laser scanning confocal microscope (Zeiss).
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3

Allicin Sourcing and Characterization

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Allicin (purity ≥ 98%) was purchased from Shanghai Yuanye Biotechnology Co. Ltd. (Shanghai, China). BSA (purity ≥ 98%) was purchased from Sigma Chemical Co. (St. Louis, MO, USA). Fructose and nitro blue tetrazolium (NBT) were purchased from Beijing Solarbio Science & Technology Co., Ltd. (Beijing, China). Aminoguanidine and Girard-T reagent were purchased from Aladdin Chemical Co. (Shanghai, China). An anti-RAGE antibody (ab37647) was purchased from Abcam (Shanghai, China).
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4

Oxidative Stress Signaling in Aorta and HUVEC

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Isolated thoracic aortic tissues or cultured HUVECs were lysed in commercially purchased RIPA lysis buffer (P0013B, Beyotime, Shanghai, China) spiked with 1 mmol/L phenylmethanesulfonyl fluoride (ST506, Beyotime, Shanghai, China) to obtain protein products. The antibodies against the following proteins were used: PXDN (1 μg/mL, ABS1675, Merck, Frankfurter, Germany), RAGE (0.3 μg/mL, ab37647, Abcam, Cambridge, UK), NOX2 (0.25 μg/mL, ab80508, Abcam, Cambridge, UK), NOX1 (0.5 μg/mL, ab131088 and ab121009, Abcam, Cambridge, UK), NOX4 (0.33 μg/mL, ab154244, Abcam, Cambridge, UK), 3-chlorotyrosine (0.1 μg/mL, 3-Cl-Tyr, HP5002, Hycult biotech, Uden, Netherlands), 4-hydroxynonenal (0.43 μg/mL, 4-HNE, ab46545, Abcam, Cambridge, UK), Akt (0.5 μg/mL, SAB4500797, Sigma-Aldrich, USA), p-Akt (0.143 μg/mL, ab18206, Abcam, Cambridge, UK), eNOS (0.25 μg/mL, 61029, BD, Biosciences, NJ, USA) and p-eNOS (0.056 μg/mL dilution, Ser1177, MA5-14957, Invitrogen, CA, USA). Expression of the protein GAPDH (0.5 μg/mL, SAB1405848, Sigma-Aldrich, MO, USA) was used for data normalization. PVDF membranes were incubated with a horseradish peroxidase linked secondary antibody and bands were visualized using gel documentation system (Bio-Rad).
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5

RAGE Protein Immunofluorescence Staining

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After permeabilization in PBS 1X/FBS 10%/Triton 0.1% over 1 h 30 min, the primary antibody against the RAGE (1/100, ab37647, Abcam) was applied on the FM sections overnight at 4°C. After three washes in permeabilization buffer, secondary antibody anti-rabbit Alexa Fluor 488 (1/1000, A21206, Life Technologies) was incubated for 2 h at room temperature. Slides were washed three times in TWEEN® PBS 1X and incubated with Hoechst (15 min, dilution in PBS 1X 1/10,000; bisBenzimide H, 33258, Sigma-Aldrich). Finally, slides were mounted with CitiFluorTM Tris-MWL 4–88 (Electron Microscopy Science) and examined under an Apotome Zeiss Imager microscope (magnification ×200). For negative controls, incubation without the primary antibody was performed.
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6

Immunohistochemical Analysis of Renal Proteins

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Renal tissue sections (4 µm) were subjected to immunohistochemical staining based on the published method with specific antibodies anti-RAGE (1:100, ab37647; Abcam), anti-nephrin (1:500, ab58968; Abcam), and anti-podocin (1:400, H-130, sc-21009; Santa Cruz Biotechnology, Inc.) (25 (link)). Color was developed by incubating with diaminobenzidine and counterstaining with hematoxylin. Controls were obtained by replacing the primary antibody with PBS. Semi quantitative analysis of the percentage of positive staining area in the glomeruli and tubules was evaluated using a computer imaging analysis system (Image-Pro Plus software version 4·5; Media Cybernetics, Inc., Rockville, MD, USA). The brown areas were judged as positive.
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7

Investigating RAGE and Inflammatory Pathways

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M199 medium and fetal calf serum (FCS) were purchased from Gibco/Invitrogen (Karlsruhe, Germany), Penicillin/streptomycin and ß-adrenergic receptor selective antagonists CGP20712A (C231), ICI118.551 (I127) and isoproterenol (I6504) from Sigma-Aldrich (Deisenhofen, Germany). Primary antibodies against the extracellular domain of human RAGE (ab37647), HMGB1 (ab18256), CML (ab27684) and NFkB (ab28856 and ab131485) were from Abcam (Cambridge, UK), against collagen type I from Southern Biotech (1310-01, Southern Biotech, Birmingham, US), against IL-6 (AF 506) and against TNFα (MAB 510) from R&D Systems/Bio-Techne (Wiesbaden, Germany), against F4/80 (#14-4801-82) and against Ly-6G (#14-5931-82) from eBioscience (San Diego, USA). HRP-conjugated secondary antibodies and all other substances used were from Sigma-Aldrich (Deisenhofen, Germany), unless specified otherwise.
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8

Immunofluorescence Staining of pAECs

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pAECs grown on collagen type I-coated coverslips in six-well plates were washed with PBS 1X before fixation with 4% paraformaldehyde (Electron Microscopy Sciences, 15710; can be stored at −80 °C). After permeabilization in PBS 1X/FBS 10%/Triton 0.1% for more than 90 min, the primary antibody against RAGE (1/1000, ab37647, Abcam, Paris, France), HMGB1 (1/400, ab79823, Abcam, Paris, France), Myd88 (1/250, ab133739, Abcam, Paris, France), TIRAP (1/100, ab17218, Abcam, Paris, France), Diaphanous-1 (1/400, ab11173, Abcam, Paris, France), and p65 NF-κB (1/400, 8242, Cell signaling, Saint-Cyr-L’Ecole, France) was applied overnight at 4 °C. After three washes in the permeabilization buffer, the secondary antibody, anti-rabbit Alexa Fluor® 488 (1/1000, A21206, Life Technologies, Villebon-Sur-Yvette, France), was incubated for 2 h at room temperature. Slides were washed three times in PBS 1X and incubated with Hoescht (15 min, dilution in PBS 1X 1/10,000; bisBenzimide H, 33258, Sigma-Aldrich, Saint-Quentin-Fallavier, France). Finally, slides were mounted with CitiFluor™ Tris-MWL 4-88 (Electron Microscopy Science, Hatfield, PA, USA) and examined under a Zeiss LSM800 Airyscan for cells. For the negative controls, incubation without the primary antibody was performed.
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9

Quantitative Western Blot Analysis

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The protein was extracted from tissues in the precooled RIPA lysate containing 1% phosphatase inhibitor and a protease inhibitor and isolated from 11% SDS-PAGE gel, and the membrane was blocked with 5% fetal bovine serum albumin in 1xTBST at RT for 2 h, then incubated overnight at 4°C with primary antibodies against GAPDH (1:2,000, CST, 5174s) and RAGE (1:1,000, abcam, ab37647). The secondary antibody was incubated (1:2000, CST, 7,074). The bands were detected by the chemiluminescence detection system (Bio-Rad Laboratories, Hercules, CA, United States) and quantified by ImageJ software.
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10

Quantification of Methylglyoxal-Derived Adducts

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Cell lysates obtained from macrophages in tissue culture or lung tissue were prepared in cell lysis buffer (Cell Signaling Technology, Danvers, MA). The resulting lysates were centrifuged at 12,000 RPM for 10 min at 4° C to remove insoluble cell debris and frozen in single use aliquots at −80° C. Prior to immunoblotting, thawed lysates were mixed with an equal volume of 2x Laemmli sample buffer (Bio-Rad, Hercules, CA) and heated to 95° C for 5 min. Samples were separated by SDS-PAGE in a continuous 10% acrylamide pre-cast gel (Bio-Rad, Hercules, CA). Proteins were transferred from the gel to a polyvinyl difluoride membrane in transfer buffer for 1 h at 4° C. Afterwards, the membrane was dried to complete adherence of protein to the membrane. Prior to probing the membrane with specific anti-MG-H1, MG-H2, and MG-H3 antibodies [42 (link)], the membrane was washed with TBS and blocked with TBS containing 0.1% v/v Tween 20 buffer and 5% w/v blotting grade blocker as previously described [43 (link)]. A rabbit monoclonal antibody specific for Glo1 (ab137098, Abcam) and a rabbit polyclonal antibody specific to RAGE (ab37647) were both diluted 1:1000 in 5% w/v blotting grade blocker and incubated with the membrane overnight at 4° C.
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