The largest database of trusted experimental protocols

11 protocols using ha c29f4

1

Western Blot and Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following Abs were used for Western blot analyses or flow cytometry analysis: p53 (DO-1, Santa Cruz), p21 (DSC60, Cell Signaling Technology, Danvers, MA), β-actin (AC-15, Sigma-Aldrich, St. Louis), His (Invitrogen), GST (B-14, Santa Cruz), HA (F-7, Santa Cruz), HA (C29F4, Cell Signaling Technology), Myc (9E10, Santa Cruz), Ab against mouse DD1α (MH5A, BioLegend), Ab against human PD-1 (J116, eBioscience), Ab against human PD-L1 (M1H1, eBioscience), CTLA4 (C-19, Santa Cruz), ICOSL (LifeSpan BioSciences), Ab against human CD14 APC (61D3, eBioscience), Ab against mouse F4/80 APC (BM8, eBioscience), Ab against mouse CD45R/B220 (RA3–6B2, eBioscience), Ab against human CD4-APC (OKT4, eBioscience), Ab against mouse CD4-APC (RM4–5, eBioscience), Ab against human CD8-APC (SK1, eBioscience) and Ab against mouse CD8a+-APC (53–6.7, eBioscience). Rabbit polyclonal and mouse monoclonal Ab against DD1α was raised against human DD1α (amino acids 33–311) as an immunogen. Beads immobilized with Abs against HA (Roche) or Myc (9B11, Cell Signaling) were used for immunoprecipitations. Recombinant human PD-1–Ig, mouse PD-1–Ig, human PD-L1–Ig, mouse PD-L1–Ig, and control Ig proteins were from R&D Systems.
+ Open protocol
+ Expand
2

Antibody Dilution Protocol for Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies purchased from Sigma‐Aldrich, with dilutions for immunoblotting, were as follows: F3165, monoclonal anti‐FLAG 1:10,000; T5168, monoclonal anti‐α tubulin 1:8,000; A0168 HRP (horseradish peroxidase)‐conjugated anti‐mouse IgG 1:10,000, A0545 HRP‐conjugated anti‐rabbit IgG 1:10,000; HPA036582, polyclonal anti‐FAM35A 1:200. D153‐8 agarose‐conjugated anti‐GFP (RQ2) was purchased from MBL International Corporation. From Clontech, polyclonal anti‐GFP antibody 632592 was used at 1:200 (for immunostaining); monoclonal anti‐GFP 632381, 1:3,000. Anti‐RAD51 antibody (B01P, 1:2,000) was purchased from Abnova. Goat anti‐mouse IgG (H+L) secondary antibody, Alexa Fluor® 594 conjugate (A‐11005) 1:2,000, goat anti‐rabbit IgG (H+L) secondary antibody, Alexa Fluor® 488 conjugate (A‐11008) 1:2,000, and goat anti‐mouse IgG (H+L) secondary antibody, Alexa Fluor® 488 conjugate (A‐11001) 1:2,000 were purchased from Thermo Fisher. Anti‐FANCD2 (EPR2302, 1:2,000 dilution) was purchased from GeneTex, Inc. From Cell Signaling Technology, monoclonal anti‐HA (C29F4) was used at 1:1,000.
+ Open protocol
+ Expand
3

Glioblastoma Cell Lines and Astroglia Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
GBM cell lines (U-118 MG, A172, U-87 MG, U-251 MG, and LN-229) and normal astroglia cells (SVGP12) were obtained from the American Type Culture Collection (ATCC) and cultured in DMEM medium supplemented with 10% fetal bovine serum (FBS) and 1% penicillin and streptomycin (P/S). The 293FT cell line was culture as previously described [2 (link)]. All cell lines were tested mycoplasma-negative.
The FBS, antibiotics, and DMEM media were obtained from Thermo Fisher Scientific (MA, USA). Crystal violet and Dimethyl sulfoxide (DMSO) were purchased from Sigma (MO, USA). The RANBP10 (21107), E-cadherin (20874), p21 (10355), CyclinD1 (60186), Myc (60003), and Tubulin (11224) antibodies were obtained from Proteinch (Wuhan, China). The c-Myc (32072) and FBXW7 (109617) were obtained from Abcam (Shanghai, China); The CDK4 (12790), CDK6 (13331), N-cadherin (13116), Flag (14793), and HA (C29F4) antibodies were obtained from Cell Signaling Technology (MA, USA).
+ Open protocol
+ Expand
4

Immunoprecipitation and Western Blotting Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoprecipitation and Western blotting analyses were performed as we previously described (23 (link)). Briefly, cells were lysed, centrifuged, and then protein concentrations were determined. Equal amounts of cell lysates were immunoprecipitated with specific antibodies and protein G-agarose beads (Invitrogen). Standard Western blotting was done with antibody against β-actin (I-19), STAT1 (C-111), STAT5 (G-2), and STAT3 (H-190) (Santa Cruz Biotechnology); Flag (M2, Sigma-Aldrich); HA (#66006-1-Ig), Lamin B1 (Proteintech Group); TRIM59 (ab69639, Abcam); EGFR (D38B1), phospho-STAT3 (Y705) (D3A7), phospho-EGFR (Y1173) (53A5), STAT3 (124H6), TCPTP (TC45)(D7T7D), Myc (9B11), Tubulin (#2148), and HA (C29F4) (Cell Signaling Technology).
+ Open protocol
+ Expand
5

Western Blot Antibody Immunodetection

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary and secondary antibodies were used: Gαi1/2 (anti-sera) 58 (link), c-Myc (13–2500, Invitrogen), GFP (A11122, Invitrogen), HA (C29F4, Cell Signaling), FLAG (PA1–984B, Invitrogen). Streptavidin-IRDye800 was from LI-COR (925–32230). Primary antibodies were diluted in 3% bovine serum albumin (BSA) and 0.1% sodium azide and incubated with blots overnight at 4°C. Streptavidin-IRDye800 was incubated for 1 hour at room temperature. For secondary antibodies, goat anti-rabbit DyLight 800 (SA535571, Invitrogen) and goat anti-mouse IRDye 800CW (926–32210, LI-COR) were used at 1:10,000.
+ Open protocol
+ Expand
6

Immunoprecipitation and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunoprecipitation, 30 μg of total protein from transfected HEK 293 cells was incubated with HA (12CA5, Roche) or Flag (M2, Sigma) antibodies in 50 μL of IP buffer at 4 °C for 4 h. Protein G Mag sepharose (Dynabeads, Invitrogen) were added to the mixture and incubated overnight. The complex was placed on a magnet and washed three times. Proteins eluted from the sepharose beads were subjected to SDS-PAGE and immunoblotting using HA (C29F4, Cell Signaling) or Flag (2EL-1B11, Merck Millipore) antibodies. For sequential reprobing of the same blots, the membranes were stripped and hybridized with another primary antibody. Blots were developed using an enhanced chemiluminescence detection kit (Amersham) and protein intensities were quantified using Image J software (version 1.48, http://imagej.nih.gov/ij/).
+ Open protocol
+ Expand
7

Quantitative Western Blotting Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary and secondary antibodies were used: Gαi1/2 (anti-sera) (56 (link)), c-Myc (13-2500, Invitrogen), GFP (A11122, Invitrogen), HA (C29F4, Cell Signaling Technology), FLAG (PA1-984B, Invitrogen). Streptavidin-IRDye800 was from LI-COR (925-32230). Primary antibodies were diluted in 3% bovine serum albumin and 0.1% sodium azide and incubated with blots overnight at 4 °C. Streptavidin-IRDye800 was incubated for 1 h at room temperature (RT). For secondary antibodies, goat anti-rabbit DyLight 800 (SA535571, Invitrogen) and goat anti-mouse IRDye 800CW (926-32210, LI-COR) were used at 1:10,000.
+ Open protocol
+ Expand
8

Antibody Characterization for Epigenetic Studies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used in this study were DICER (3363, rabbit; Cell Signaling), ZRF1 (NBP2-12802; Novus Biologicals). RING1B clone (D22F2, 5694, rabbit; Cell Signaling), XPA (GTX103168, mouse; Genetex), XPA (FL-273, rabbit; Santa Cruz) H2B (V119 8135, mouse; Cell Signaling), FLAG (mouse; Sigma), H4K20me2 (39173, rabbit; Active Motif), H4K16ac (39930, rabbit; Active Motif), H3K36me2 (39256, rabbit; Active Motif), CPD (mouse; CosmoBio), HA (C29F4, rabbit; Cell Signaling), XPB (S-19, rabbit; Santa Cruz), MMSET (39880, mouse; Active Motif), 53BP1 (NB100-304, rabbit; Novus), and SETD8 (C18B7, rabbit; Cell Signaling).
+ Open protocol
+ Expand
9

Western Blot Analysis of Cellular Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA buffer (Beyotime, Jiangsu, China) with protease inhibitor and phosphatase inhibitor cocktails (Beyotime) was used to extract protein lysates. Western blotting procedures were performed as described previously [19 (link)]. Antibodies against c-MYC (E5Q6W) (1:1000, #18,583), GAPDH (14C10) (1:1000, #2118), CCND1 (E3P5S) (1:1000, #55,506), c-Jun (60A8) (1:1000, #9165), AGO2 (C34C6) (1:1000, #2897), CDK4 (D9G3E) (1:1000, #12,790), caspase-3 (1:1000, #9662), cleaved caspase-3 (Asp175) (5A1E) (1:1000, #9664), PARP (46D11) (1:1000, #9532), ubiquitin (E6K4Y) (1:1000, #20,326) and HA (C29F4) (1:1000, #3724) were purchased from Cell Signaling Technology (CST, MA, USA). MYCBP (2E9) (1:1000, sc-517,020) was purchased from Santa Cruz (Cambridge, MA, USA). Secondary antibodies: anti-rabbit IgG, HRP-linked antibody (1:1000, #7074) and HRP-conjugated anti-mouse IgG, antibody (1:1000, #7076) were purchased from CST (USA).
+ Open protocol
+ Expand
10

Antibody Source and Dilution Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were obtained from Cell Signaling Technologies: HA (C29F4) (1:6000), Lamin(A/C) (2032), pERK (4370), ubiquitin (3933), PJA2 (40180), and β-TrCP (D13F10), β-actin (8H10D10) (1:20,000), myc tag (71D10), and α-tubulin (2144) (1:5000). pERK (sc-7383 and sc-16982-R), PJA1 (sc-517068), and GFP (sc-9996) (1:6000) were obtained from Santa Cruz Biotechnology. Ki67 was obtained from Dako. Phospho Ser/Thr (ab17464), T7 tag (ab9138), capicua (ab123822), ETV1 (ab81086), Renilla (ab187338), and myc protein (ab3207) were obtained from Abcam. The following antibodies were purchased from Millipore T7 tag (69522), capicua (ABN446) and capicua (MABN449). FLAG-M2 (F1804), β-actin (A5316) (1:10,000), vinculin (V9264) (1:30,000), ETV5 (WH0002119M2), and polyclonal ERK (M5670) antibodies (1:5000) were obtained from Sigma. PJA1 (MBS153701) was purchased from MyBioSource.com. All antibodies were utilized at a 1:1,000 dilution unless otherwise specified.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!