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3 protocols using anti lc3b d11

1

Multiparametric Flow Cytometry Analysis

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Cell surface markers were stained in 1×PBS containing 2% FBS with indicated antibodies. Anti-CD4 (RM4-5), anti-CD8 (53-6.7), anti-CD25 (PC61), anti-CD44 (IM7), anti-CD62L (MEL-14), anti-CD45.1 (A20), and anti-CD45.2 (104) were purchased from eBioscience. Intracellular staining was performed using the Foxp3/Transcription Factor Staining Kit (eBioscience) with indicated antibodies. For intracellular cytokine staining, cells were stimulated for 4 h with phorbol 12-myristate 13-acetate (50 ng/mL; Sigma-Aldrich) and ionomycin (1 μg/mL; Sigma-Aldrich), and then treated for another 1 h with Golgi-Plug (BD Biosciences). Anti–IFN-γ (XMG1.2), anti-IL17A (eBio17B7), and anti–IL-4 (eBio 11B11) were purchased from eBioscience, and anti–cleaved caspase-3(Asp175) (D3E9), anti–phospho-H2A.x(Ser139) (20E3), and anti-LC3b (D11) were purchased from Cell Signaling Technology. All data collection was performed with a FACSAria II cell sorter (BD Biosciences), and data analysis was done with FlowJo software (Tree Star).
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2

Quantifying Autophagy via LC3 Puncta

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Cells were fixed with 2% paraformaldehyde in PBS for 10 min at 4 °C and permeabilized with acetone for 10 min at room temperature. Blocking was performed in 5% BSA, and primary antibodies were incubated overnight at 4 °C. Anti‐LC3B(D11) was from Cell Signaling Technology (Ozyme). After incubation for 1 h with conjugated secondary antibodies, cell nuclei were counterstained with Hoechst. Cells were visualized with an Axioimager microscope (Carl Zeiss) and the axiovision® software at a 100× magnification and processed with imagej software. Autophagy was measured by visual counting of LC3 punctua (with 50 randomly selected cells for each condition).
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3

Caspase-8 Antibody Characterization in HSV-1 Infection

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Caspase-8 (human) monoclonal antibody (12F5; ALX-804-242) directed against the p18 subunit was purchased from Enzo Life Sciences. Monoclonal anti-US11 and anti-ICP8 were provided by professor Bernad Roizman. Anti-GAPDH (sc-32233), anti-HSV-1 UL42 (sc-53333) and goat anti-mouse IgG, F(ab')2-PE (sc-3798) and anti-Atg3 (sc-393660) were purchased from Santa Cruz Biotechnology. Anti-caspase 3 (#9662), anti-PARP (#9542), GAPDH (Rabbit mAb #2118) and anti-LC3B(D11) (Rabbit mAb #3868) were provided from Cell Signaling Technology. Secondary HRP-conjugated anti-mouse IgGVeriBlot for IP were from Abcam. Secondary HRP-conjugated goat anti-mouse IgG and goat anti-rabbit IgG were purchased from Millipore. The z-IETD-FMK caspase-8 inhibitor (ab141382) was purchased from Abcam.
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