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8 protocols using anti tet1

1

Western Blot Analysis of Protein Targets

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Total proteins were isolated from the cell extracts, and 30 μg of protein were separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Bedford, MA, USA). After probing with primary antibodies, membranes were washed in Tris-buffered saline that contained 0.05% Tween-20 (TBST) and incubated with a horse-radish peroxidase-linked secondary antibody. Finally, the obtained bands were detected using an Enhanced Chemiluminescence Detection Kit (Amersham). The primary antibodies used were as follows: anti-FLAG (Sigma-Aldrich), anti-p-H2AX (Ser-139) (Cell Signaling Technology), anti-ROC1 (Epitomics), anti-DDB1 (Epitomics), anti-DCAF1 (ProteinTech), anti-RASSF5 (Abcam), anti-TET1 (Abcam) and anti-ERK1/2 (Santa Cruz Biotechnology) antibodies (1:1000).
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2

Immunohistochemical Analysis of Epigenetic Markers

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Immunohistochemical analysis was performed as described in our previous study. Briefly, all tumor xenograft sections were deparaffinized with xylene and rehydrated through an alcohol gradient, and then, endogenous peroxidase was inactivated by 0.5% H2O2 for 10 min. Subsequently, the sections were blocked with 5% normal goat serum for 1 h and washed three times with PBS, followed by incubation at 4 °C overnight with one of the following primary antibodies: anti-5-hmC (1:100, Active Motif), anti-5mC (1:100, Active Motif), anti-TET1 (1:300, Abcam), anti-TET2 (1:300, Abcam), anti-TET3 (1:300, Abcam), anti-DNMT1 (1:100, Abcam), anti-DNMT3A (1:500, Abcam), anti-DNMT3B (1:100, Abcam), anti-Ki 67 (1:200, Abcam), and anti-luciferase (1:1000, Abcam). The sections were incubated with horseradish peroxidase (HRP)-conjugated secondary antibody at room temperature for 1 h and developed with a DAB kit.
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3

Western Blot Analysis of Tet Enzymes

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Cells were lysed in sodium dodecyl sulphate buffer. The protein concentration was measured by BCA assay kit (Thermo). Equal amounts of cell lysates were loaded, blotted onto a PVDF membrane and probed with the following primary antibodies: anti-Tet1 (1:500, Abcam), anti-Tet2 (1:1000, Millipore), anti-Gapdh (1:4000, Abcam) anti-Lefty 1/2 (1:1000, Abcam). Gapdh was used as loading controls. After incubation with the appropriate secondary antibodies, signals were visualized by enhanced chemiluminescence (GE systems).
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4

Immunohistochemical Profiling of TET1 and Twist

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Representative areas were selected via H&E staining, and anti‐TET1 (Abcam, Shanghai, China) or anti‐Twist was used for IHC according to manufacturer's programme.
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5

Immunoblotting Analysis of Epigenetic Regulators

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The isolated left temporal lobe cortex was added with ice-cold protein lysate and centrifuged at 12000 r/min for 20 min at 4°C. Protein samples were separated by electrophoresis using SDS-PAGE and transferred onto PVDF membranes (Millipore, United States). After blocking with 5% nonfat milk for 2 h at room temperature, the membranes were incubated with the primary antibodies at 4°C overnight and then incubated with HRP-conjugated secondary IgG antibodies. The primary antibodies used here included anti-Tet1 (1 : 1000, Abcam, UK, Cat. No. 191698), anti-Tet2 (1 : 1000, Millipore, United States, Cat. # ABE364), anti-Slc44a1 (1 : 1000, Abcam, UK, Cat. No. 110767), and anti-β tubulin (1 : 2000, Cell Signaling Technology, United States, Cat. #2128). The membranes were then developed using ECL detection, and the signals were detected with Tanon-5200 Chemiluminescent Imaging System (Tanon, Shanghai, China). The protein levels were analyzed by Image J software (NIH, Bethesda, USA) and normalized to the corresponding β-tubulin level.
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6

Antibody Sources for Cellular Analyses

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The antibodies were purchased from Millipore (anti-Tet1, anti-H3K27me3, anti-H3K4me3), Abcam (anti-ssDNA, anti-Tet2), Roche (anti-HA-12CA5), Cell Signaling (anti-EZH2) Sigma-Aldrich (anti-β-actin), SantaCruz (anti-PCNA-sc56; anti-cMYC sc-764; anti-mOCT3/4 sc-5279; anti-N-MYC sc56729; anti-E2F1;anti-Stat3 sc-482; anti-hNANOG sc-33759; anti-hOCT3/4 sc-9081, anti-p16 sc-1661, anti-p21 sc-397), Bethyl (anti-mNanog) and Active Motif (anti-5mC, anti-5hmC).
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7

Validating TET Protein Production in HEK293 Cells

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To verify whether transfection with pSELECT-GFPzeo-TET1 or pSELECT-GFPzeo-TET2 vectors results in the production of the respective TET proteins, HEK293 cells were suspended in 500 µL of RIPA buffer containing protease inhibitor mix, incubated on ice for 10 min, and then centrifuged at 400× g for 20 min at 4 °C. The protein concentration was determined using the BCA Protein Assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Twenty micrograms of the extract were used for electrophoresis and transferred to the membrane following standard procedures. The membrane was blocked and incubated with anti-TET1 (1:1000; Abcam, Cambridge, UK), anti-TET2 (1:500, Active-Motif, Carlsbad, CA, USA), or anti-GFP (1:1000, Thermo Fisher Scientific, Waltham, MA, USA) primary antibodies, washed in TBST and incubated with the appropriate secondary antibodies. Signals were detected using the Clarity ECL Western Blotting Substrate (Bio-Rad, Hercules, CA, USA) and analyzed using a GeneGnome chemiluminescence imaging system (Syngene, Cambridge, UK) and Image Studio Lite 4.0 software (LI-COR, Lincoln, NE, USA) (Supplementary Figure S1).
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8

Immunostaining of ADCY6 and TET1 in cells

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Cells were fixed with 4% paraformaldehyde and permeabilized with 0.25% Triton X-100 solution for 20 min. Cells were washed with PBS and then blocked in 5% bovine serum albumin for 1 h at room temperature. Coverslips were incubated with anti-ADCY6 (1:300, Abcam, USA) and anti- TET1 (1:500, Abcam, USA) antibodies overnight at 4°C. After washing with PBS, cells were incubated with appropriate secondary antibody and 4′,6-diamidino-2-phenylindole (DAPI). Slides were imaged using an inverted fluorescence microscope.
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