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7 protocols using cd45ro apc

1

Single-cell expansion and antigen-specific T-cell analysis

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Up to 4 biopsies per patient were pooled and digested in 1 mL of Hanks’ balanced salt solution Ca2+Mg2+ (Gibco) supplemented with 0.5% (v/v) human AB-serum, 100 IU ml−1 of penicillin, 100 µg ml−1 of streptomycin, 0.25 µg ml−1 of amphotericin B, 10 IU ml−1 of DNase I (CellSystems) and 1 mg ml−1 of collagenase type CLS IV (Biochrom) for 30 min at 37 °C while shaking. Cells were filtered through a 40-µm cell strainer to remove aggregates and stained with fluorochrome-conjugated antibodies to CD4-VioBlue, CD3-PE, CD8-PerCP, CD14-PerCP, CD20-PerCP, CD45RO-APC and CCR7-PE-Vio770 (all Miltenyi Biotec). Each 200 CD3+CD4+CD45RO+ cells were sorted in multiple wells of a 96-well plate containing irradiated allogeneic feeder cells in TexMACS medium, supplemented with 5% (v/v) human AB-serum, 200 U ml−1 of IL-2 and 100 IU ml−1 of penicillin, 100 µg ml−1 of streptomycin, 0.25 µg ml−1 of amphotericin B at a density of 2 × 105 cells cm−2. Cells were polyclonally expanded for 4 weeks in the presence of 30 ng ml−1 of anti-CD3 (OKT-3; Miltenyi Biotec). Restimulation with different fungal lysates was performed as described above. To calculate the frequencies of reactive T cells, the mean values were calculated for each antigen and divided by the number of input wells.
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2

Characterization of Transduced T Cell Subsets

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Transduced cells were stained with fluorochrome-conjugated monoclonal antibodies for 15 min at 4°C. The cells were washed twice with 1x PBS supplemented with 1% FBS. For cell surface marker analysis, the following antibodies were used: CD56-PE (HCD56/Cat#130-114-551), CD4-FITC (OKT4/130-114-531), CD8-APC (SK1/130-110-679), CD45RO-APC (UCHL1/130-113-556), CD62L-FITC (DREG-56/130-112-077), CD25-APC (BC96/130-113-284) (Miltenyi Biotec, Bergisch Gladbach, Germany), PD1-FITC (EH12.2H7/329904), LAG-3-FITC (11C3C65/369308), TIM-3-APC (F38-2E2/345012), and CD3-PerCP (clone OKT3/317336) (BioLegend, San Diego, CA, USA). The memory phenotypes were defined as naïve (TN; CD3+CD45ROCD62L+), effector memory (TEM; CD3+CD45RO+CD62L), central memory (TCM; CD3+CD45RO+CD62L+), and terminal effector (TE; CD3+CD45ROCD62L) T cells. For transduction efficiency of transduced cells, AF647-conjugated anti-human IgG (H+L) (Jackson ImmunoResearch/109-607-003) was used to detect CAR expression. Flow cytometry was performed using a BD Accuri™ C6 Plus Flow Cytometer (BD Bioscience), and data were analyzed by the FlowJo V10.7.1 software (FlowJo).
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3

Phenotyping of T and NK cell subsets

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T cells and NK cells were obtained as described above. Cells were incubated with fluorochrome-labeled antibodies at 4°C. Specific antibodies for the T cell subsets include CD3 V450, CCR7 FITC, CD45RO APC and CD45RA Viogreen (Miltenyi Biotech, Auburn, CA). Specific antibodies for the NK cell subsets include, CD56 FITC, CD11b V450, CD3 Viogreen, and CD27 APC (Miltenyi Biotech, Auburn, CA). Flow cytometry was performed as previously described (19 (link)).
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4

Immunophenotyping of PBMC and T-cells

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Staining of cell surface markers on PBMC and T-cells was performed with CD3-APC/Vio770, CD4-Vioblue, CD8-Viogreen, CD19-FITC, CD56-PE/Vio770, CD16-PE, CD62L-Vioblue, CD45RA-PE, CD45RO-APC, and CCR7-FITC (Miltenyi, San Diego, CA; BD, Franklin Lakes, NJ). All samples were acquired on a MACSQuant Cytometry (Miltenyi) and the data analyzed with Flow Jo (Treestar, Ashland, OR).
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5

Comprehensive CBMC and T Cell Immunophenotyping

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Staining of cell surface markers on CBMCs and T cells was performed with CD3-APC/Vio770, CD4-Vioblue, CD8-Viogreen, CD19-FITC, CD56-PE/Vio770, CD16-PE, CD62L-Vioblue, CD45RA-PE, CD45RO-APC, and CCR7-FITC (Miltenyi Biotec and BD Biosciences). 50,000 events per sample were acquired on a MACSQuant cytometer (Miltenyi), and the data were analyzed with Flow Jo (Tree Star).
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6

Immunophenotyping of CAR T-cell Infusion Products

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For CAR T-cell differentiation, at least 106 cells from infusion product leftovers were used. Cells were incubated with the CD19 CAR detection reagent (Miltenyi Biotec). After wash, the following antibodies were added: biotin-PE, CD3-FITC, CD4-VioGreen, CD8-APC-Vio770, CD45RO-APC (clone REA611, catalog no. 130–115–556), CD62L-Pe-Vio700 (clone 145/15, catalog no. 130–113–621) and CD197-VioBlue (clone REA546, catalog no. 130–117–353; all from Miltenyi Biotec). Data were acquired on BD FACSCanto II (BD Biosciences) or MACSQuant Analyzer MQ10 (Miltenyi Biotec) and analyzed using FlowJo software (RRID:SCR_008520), version 10. Additional information on differentiation status of CAR T cells within infusion products are reported in Supplementary Fig. S5.
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7

Expansion and Characterization of Antigen-Specific T Cells

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Up to 4 biopsies per patient were pooled and digested in 1 mL of Hanks’ balanced salt solution Ca2+Mg2+ (Gibco) supplemented with 0.5% (v/v) human AB-serum, 100 IU ml−1 of penicillin, 100 μg ml−1 of streptomycin, 0.25 μg ml−1 of amphotericin B, 10 IU ml−1 of DNase I (CellSystems) and 1 mg ml−1 of collagenase type CLS IV (Biochrom) for 30 min at 37 °C while shaking. Cells were filtered through a 40-μm cell strainer to remove aggregates and stained with fluorochrome-conjugated antibodies to CD4-VioBlue, CD3-PE, CD8-PerCP, CD14-PerCP, CD20-PerCP, CD45RO-APC and CCR7-PE-Vio770 (all Miltenyi Biotec). Each 200 CD3+CD4+CD45RO+ cells were sorted in multiple wells of a 96-well plate containing irradiated allogeneic feeder cells in TexMACS medium, supplemented with 5% (v/v) human AB-serum, 200 U ml−1 of IL-2 and 100 IU ml−1 of penicillin, 100 μg ml−1 of streptomycin, 0.25 μg ml−1 of amphotericin B at a density of 2 × 105 cells cm−2. Cells were polyclonally expanded for 4 weeks in the presence of 30 ng ml−1 of anti-CD3 (OKT-3; Miltenyi Biotec). Restimulation with different fungal lysates was performed as described above. To calculate the frequencies of reactive T cells, the mean values were calculated for each antigen and divided by the number of input wells.
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